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Platform GPL18620 Query DataSets for GPL18620
Status Public on May 31, 2015
Title Affymetrix Rice Genome Array (custom CDF; RAGP7)
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Oryza sativa
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description The custom CDF file containing all selected probes was created using ArrayInitiative.
Gene-level synonymous probesets were grouped according to corresponding gene ID, based on the Affymetrix Rice Annotation File (Release 29, 07/01/09).
Gene locus IDs were obtained from the MSU Rice Genome Annotation Project gene set (release RAGP 7; http://rice.plantbiology.msu.edu/index.shtml) and the Rice Annotation Project Database (RAP-DB), gene function annotation was according to RGAP 7.
 
Submission date Apr 29, 2014
Last update date May 31, 2015
Contact name Xia Li
E-mail(s) li2@mpimp-golm.mpg.de
Organization name Max-Planck-Institute of Molecular Plant Physiology
Street address Am Mühlenberg 1
City Potsdam
ZIP/Postal code 14476
Country Germany
 
Samples (35) GSM1376277, GSM1376278, GSM1376279, GSM1376280, GSM1376281, GSM1376282 
Series (1)
GSE57154 Gene expression signatures of rice floral organs before and after pollination under heat and combined drought and heat stress
Relations
Alternative to GPL2025 (Alternative CDF [official])

Data table header descriptions
ID
ProbeSetIDs
CLONE_ID Rice Locus Identifier

Data table
ID ProbeSetIDs CLONE_ID
loc_os01g16480 osaffx.9996.1.s1_x_at LOC_Os01g16480
loc_os01g16610 osaffx.9990.1.s1_x_at;osaffx.9990.1.s1_at LOC_Os01g16610
loc_os06g43180 osaffx.9977.1.s1_x_at;os.49183.1.s1_at LOC_Os06g43180
loc_os01g11080 osaffx.9938.1.s1_at LOC_Os01g11080
loc_os01g11220 osaffx.9933.1.s1_at LOC_Os01g11220
loc_os01g59230 osaffx.993.1.s1_at;osaffx.25936.7.s1_s_at;osaffx.25936.1.s1_s_at;osaffx.25936.1.s1_at;osaffx.20049.1.s1_x_at;osaffx.10110.2.s1_at LOC_Os01g59230
loc_os01g11820 osaffx.9915.1.s1_x_at;os.53712.1.s1_x_at LOC_Os01g11820
loc_os01g12200 osaffx.9908.1.s1_x_at;os.3507.1.s1_at LOC_Os01g12200
loc_os05g20350 osaffx.9893.1.s1_at;osaffx.4384.1.s1_at LOC_Os05g20350
loc_os01g13070 osaffx.9884.1.s1_at LOC_Os01g13070
loc_os01g13120 osaffx.9883.1.s1_x_at;os.20516.1.s1_at LOC_Os01g13120
loc_os07g19330 osaffx.9850.2.s1_at;osaffx.9850.1.s1_s_at LOC_Os07g19330
loc_os01g59550 osaffx.985.7.s1_x_at;osaffx.985.2.s1_at LOC_Os01g59550
loc_os01g59560 osaffx.985.3.s1_x_at;os.29822.1.s1_at LOC_Os01g59560
loc_os08g27780 osaffx.9832.1.s1_x_at LOC_Os08g27780
loc_os08g32630 osaffx.9826.1.s1_at;os.17822.2.s1_s_at LOC_Os08g32630
loc_os08g40650 osaffx.9806.1.s1_at;osaffx.17440.1.s1_at LOC_Os08g40650
loc_os01g60280 osaffx.980.1.s1_at;os.34757.1.s1_at LOC_Os01g60280
loc_os01g72760 osaffx.9749.1.s1_at LOC_Os01g72760
loc_os01g73090 osaffx.9743.2.s1_x_at LOC_Os01g73090

Total number of rows: 26358

Table truncated, full table size 1457 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL18620_Gene_level_probeset_annotations.csv.gz 232.0 Kb (ftp)(http) CSV
GPL18620_Rice_custom_for_Robin.cdf.gz 10.6 Mb (ftp)(http) CDF
GPL18620_Rice_custom_for_Robin.cdf.txt.gz 4.7 Mb (ftp)(http) TXT

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