NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL18657 Query DataSets for GPL18657
Status Public on Jan 30, 2015
Title NimbleGen mouse mm9 chromosome X tiling array [100331_MM9_HB_ChIP_HX1]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol See manufacturer's web site (www.nimblegen.com).
 
Description Custom microarray containing specific tiled regions encompassing 93.84 Mb of the mouse X chromosome.
Annotation in this record is based on NCBI mouse build 37 (MGSCv37; UCSC mm9).
Native array description file: 100331_MM9_HB_ChIP_HX1.ndf
Native array description file: 100331_MM9_HB_ChIP_HX1.pos
 
Submission date May 06, 2014
Last update date Jan 30, 2015
Contact name Chandr Sekhar Reddy Chilamakuri
E-mail(s) chandu.ncbs@gmail.com
Phone 004798686671
Organization name The Norwegian Radium Hospital
Department Tumor Biology
Street address FĂ„dveien 15
City Oslo
ZIP/Postal code 0751
Country Norway
 
Samples (4) GSM1380994, GSM1380995, GSM1380996, GSM1380997
Series (2)
GSE57357 ChIP-chip from mouse 14.5 days fetal brain with P300 and H3K4Me1
GSE57358 ChIP-chip from human and mouse fetal brain

Data table header descriptions
ID Probe ID
SEQUENCE Sequence of oligo
Chromosome Chromosomal location of oligo (NCBI mouse build 37)
RANGE_GB RefSeq accession.version of chromosome (NCBI mouse build 37)
RANGE_START Chromosomal start position of oligo (NCBI mouse build 37)
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo (NCBI mouse build 37)

Data table
ID SEQUENCE Chromosome RANGE_GB RANGE_START LENGTH RANGE_END
CHRXFS003000026 ATGATTTGTTTTTCTTGACATCTTCAGTTCTTTACATAGTTTTCATATTAGTCCTCTA chrX NC_000086.6 3000026 58 3000083
CHRXFS003000106 TATTTTCCAATTCTGTAAGCTGCCTTCTTGATGGAGTGATAATGTCCTTTGCTTTACACAA chrX NC_000086.6 3000106 61 3000166
CHRXFS003000783 GTAGATTGCTTTGGCGGGATAGTACTTTTTTGTTTGCTATTTTTATTAATCCATGA chrX NC_000086.6 3000783 56 3000838
CHRXFS003010865 CAGTCCTCTGTTCCTAGGGGCGGTAGGGAAGCCGAGGTAGGCTTTATGAG chrX NC_000086.6 3010865 50 3010914
CHRXFS003011139 TTCCTTTAAGCCAAATTAGACCGTGTTGTTTTCCGTTCTAGGTGAACCTTA chrX NC_000086.6 3011139 51 3011189
CHRXFS003011514 AACACCCATATGTGGTCCCTATCCCATTTGGGACACACAGCTCCTCAGGG chrX NC_000086.6 3011514 50 3011563
CHRXFS003012249 AAGAGGAAGGAGAGCCACCCAGTATTTTCTGCAGGTCTCAATGGCTAATT chrX NC_000086.6 3012249 50 3012298
CHRXFS003012889 GGATCGCTGGTCCACAATAGCTCTTTTATGTTATACCTCCCATCCTCAGG chrX NC_000086.6 3012889 50 3012938
CHRXFS003014124 CCATCTTTTACGCCCTCTGAGGGTATACCCTAGGTAGGTTACCTCAGTTT chrX NC_000086.6 3014124 50 3014173
CHRXFS003015024 TAGTTTGGTTAACAGATCGTACCCCAAGAGGGGAGCAGGGCACTCAGGTA chrX NC_000086.6 3015024 50 3015073
CHRXFS003015954 CCAGTTGGGGCTTTCAAGGGGAAAGCTTCATCCATGAGGTTAGGGAGGGC chrX NC_000086.6 3015954 50 3016003
CHRXFS003016644 CCCCCTTCTTCCTGAAAAACAATTCGCCTGATGGCGGCGATTACTGACAA chrX NC_000086.6 3016644 50 3016693
CHRXFS003016914 AAAAGAAATCAGAAACAGCAGCAACTCTGCGTCGACCACAAGCAACTCAAA chrX NC_000086.6 3016914 51 3016964
CHRXFS003017394 GAACACAAACAGACCAAAACAGAACAAAAAATCTTACCTCTACGTGGGTCTAG chrX NC_000086.6 3017394 53 3017446
CHRXFS003030972 AGACCAGCTAGCCTCCTGTTTCTTCCATTTCTTTCGCCAATATCTTCTCT chrX NC_000086.6 3030972 50 3031021
CHRXFS003033717 ATGACAACATTTTACGTTGTCACGAGTTTATTAAATCTCAATTATGGACATTGGCAAA chrX NC_000086.6 3033717 58 3033774
CHRXFS003034203 AAAGTTATAGTCAATACTCATACAAGACTTGTCAGAGTGCATTGCCACAGACAATCTGG chrX NC_000086.6 3034203 59 3034261
CHRXFS003035153 CAAGCTGACTCCACCAGAGTCCGTGACAGTGCATAAGTTTTCCTACTTCT chrX NC_000086.6 3035153 50 3035202
CHRXFS003035283 TTCCCTTTCCAAGTTTCCTCTCCAAAAACACTCTATTCCTTCTCCCTTTCC chrX NC_000086.6 3035283 51 3035333
CHRXFS003037724 TTTTGGTAACAGTAATTGCCACACCCACTCCATTAAAAACTTCATGGCAAGCCCAA chrX NC_000086.6 3037724 56 3037779

Total number of rows: 2002139

Table truncated, full table size 217498 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL18657_101331_MM9_HB_ChIP_HX1.ndf.gz 116.0 Mb (ftp)(http) NDF
GPL18657_101331_MM9_HB_ChIP_HX1.pos.gz 14.8 Mb (ftp)(http) POS

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.