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Status
Public on May 12, 2005
Title
CCC-NB5000-Chip-version1
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens
Description
Spotted long cDNA array on glass. This set includes 5340 cDNAs, whose average size is approximately 2.5kb. Insert DNAs were amplified by PCR from the cDNA clones, purified by ethanol precipitation, and spotted onto a glass slide at a high density with an ink-jet printing tool. Keywords = spotted by ink-jet printing, oligo-capping cDNA
Submission date
Feb 17, 2005
Last update date
Apr 12, 2008
Contact name
Akira Nakagawara
E-mail(s)
akiranak@chiba-cc.jp
Phone
+81-43-264-5431
Fax
+81-43-265-4459
Organization name
Chiba Cancer Center Research Institute
Lab
Division of Biochemistry
Street address
666-2 Nitona, Chuo-ku
City
Chiba
ZIP/Postal code
260-8717
Country
Japan
Samples (136)
GSM42391 , GSM42392 , GSM42393 , GSM42394 , GSM42395 , GSM42396
GSM42397 ,
GSM42398 ,
GSM42399 ,
GSM42400 ,
GSM42401 ,
GSM42402 ,
GSM42403 ,
GSM42404 ,
GSM42405 ,
GSM42406 ,
GSM42407 ,
GSM42408 ,
GSM42409 ,
GSM42410 ,
GSM42411 ,
GSM42412 ,
GSM42413 ,
GSM42414 ,
GSM42415 ,
GSM42416 ,
GSM42417 ,
GSM42418 ,
GSM42419 ,
GSM42420 ,
GSM42421 ,
GSM42422 ,
GSM42423 ,
GSM42424 ,
GSM42425 ,
GSM42426 ,
GSM42427 ,
GSM42428 ,
GSM42429 ,
GSM42430 ,
GSM42431 ,
GSM42432 ,
GSM42433 ,
GSM42434 ,
GSM42435 ,
GSM42436 ,
GSM42437 ,
GSM42438 ,
GSM42439 ,
GSM42440 ,
GSM42441 ,
GSM42442 ,
GSM42443 ,
GSM42444 ,
GSM42445 ,
GSM42446 ,
GSM42447 ,
GSM42448 ,
GSM42449 ,
GSM42450 ,
GSM42451 ,
GSM42452 ,
GSM42453 ,
GSM42454 ,
GSM42455 ,
GSM42456 ,
GSM42457 ,
GSM42458 ,
GSM42459 ,
GSM42460 ,
GSM42461 ,
GSM42462 ,
GSM42463 ,
GSM42464 ,
GSM42465 ,
GSM42466 ,
GSM42467 ,
GSM42468 ,
GSM42469 ,
GSM42470 ,
GSM42471 ,
GSM42472 ,
GSM42473 ,
GSM42474 ,
GSM42475 ,
GSM42476 ,
GSM42477 ,
GSM42478 ,
GSM42479 ,
GSM42480 ,
GSM42481 ,
GSM42482 ,
GSM42483 ,
GSM42484 ,
GSM42485 ,
GSM42486 ,
GSM42487 ,
GSM42488 ,
GSM42489 ,
GSM42490 ,
GSM42491 ,
GSM42492 ,
GSM42493 ,
GSM42494 ,
GSM42495 ,
GSM42496 ,
GSM42497 ,
GSM42498 ,
GSM42499 ,
GSM42500 ,
GSM42501 ,
GSM42502 ,
GSM42503 ,
GSM42504 ,
GSM42505 ,
GSM42506 ,
GSM42507 ,
GSM42508 ,
GSM42509 ,
GSM42510 ,
GSM42511 ,
GSM42512 ,
GSM42513 ,
GSM42514 ,
GSM42515 ,
GSM42516 ,
GSM42517 ,
GSM42518 ,
GSM42519 ,
GSM42520 ,
GSM42521 ,
GSM42522 ,
GSM42523 ,
GSM42524 ,
GSM42525 ,
GSM42526
Series (2)
GSE2283
Primary human neuroblastoma
GSE5779
Gene expression profiling of sporadic neuroblastoma
Data table header descriptions
ID
SPOT_ID_CCC
Specific ID of spots
GENE_IDENTIFIER
cDNA clone ID
GB_ACC
GenBank accession number of cDNA sequence
SPOT_ID
GENE_SYMBOL
Descriptive gene name, from UCSC Genome Browser
BLOCK_COLUMN
Block column within array
BLOCK_ROW
Block row within array
COLUMN
Column within array block
ROW
Row within array block
PT_ACC
Data table
ID
SPOT_ID_CCC
GENE_IDENTIFIER
GB_ACC
SPOT_ID
GENE_SYMBOL
BLOCK_COLUMN
BLOCK_ROW
COLUMN
ROW
PT_ACC
1
NB5_4675
gene001-1
NM_012423
RPL13A
1
3
1
19
2
NB5_5036
gene001-2
NM_012423
RPL13A
2
3
1
19
3
NB5_5397
gene001-3
NM_012423
RPL13A
3
3
1
19
4
NB5_5758
gene001-4
NM_012423
RPL13A
4
3
1
19
5
NB5_6119
gene001-5
NM_012423
RPL13A
5
3
1
19
6
NB5_6480
gene001-6
NM_012423
RPL13A
6
3
1
19
7
NB5_2937
gene002
AF036892
ACTR
3
2
11
3
8
NB5_2509
gene003-1
NM_001101
ACTB
1
2
1
19
9
NB5_2870
gene003-2
NM_001101
ACTB
2
2
1
19
10
NB5_3231
gene003-3
NM_001101
ACTB
3
2
1
19
11
NB5_3592
gene003-4
NM_001101
ACTB
4
2
1
19
12
NB5_3953
gene003-5
NM_001101
ACTB
5
2
1
19
13
NB5_4314
gene003-6
NM_001101
ACTB
6
2
1
19
14
NB5_1683
gene004
NM_170731
BDNF
5
1
11
13
15
NB5_4020
gene005
U47741
CBP
6
2
11
3
16
NB5_4742
gene006
BC012037
DAN
2
3
11
3
17
NB5_1844
gene007
NM_000610
CD44
6
1
1
3
18
NB5_1312
gene008
BC005864
CDK4
4
1
1
13
19
NB5_3127
gene009
NM_005343
c-Ha-Ras
3
3
11
13
20
NB5_3117
gene010
NM_006565
CTCF
3
2
1
13
Total number of rows: 5340 Table truncated, full table size 264 Kbytes .
Supplementary data files not provided