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Platform GPL1875 Query DataSets for GPL1875
Status Public on May 12, 2005
Title CCC-NB5000-Chip-version1
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
 
Description Spotted long cDNA array on glass.
This set includes 5340 cDNAs, whose average size is approximately 2.5kb.
Insert DNAs were amplified by PCR from the cDNA clones, purified by ethanol precipitation, and spotted onto a glass slide at a high density with an ink-jet printing tool.
Keywords = spotted by ink-jet printing, oligo-capping cDNA
 
Submission date Feb 17, 2005
Last update date Apr 12, 2008
Contact name Akira Nakagawara
E-mail(s) akiranak@chiba-cc.jp
Phone +81-43-264-5431
Fax +81-43-265-4459
Organization name Chiba Cancer Center Research Institute
Lab Division of Biochemistry
Street address 666-2 Nitona, Chuo-ku
City Chiba
ZIP/Postal code 260-8717
Country Japan
 
Samples (136) GSM42391, GSM42392, GSM42393, GSM42394, GSM42395, GSM42396 
Series (2)
GSE2283 Primary human neuroblastoma
GSE5779 Gene expression profiling of sporadic neuroblastoma

Data table header descriptions
ID
SPOT_ID_CCC Specific ID of spots
GENE_IDENTIFIER cDNA clone ID
GB_ACC GenBank accession number of cDNA sequence
SPOT_ID
GENE_SYMBOL Descriptive gene name, from UCSC Genome Browser
BLOCK_COLUMN Block column within array
BLOCK_ROW Block row within array
COLUMN Column within array block
ROW Row within array block
PT_ACC

Data table
ID SPOT_ID_CCC GENE_IDENTIFIER GB_ACC SPOT_ID GENE_SYMBOL BLOCK_COLUMN BLOCK_ROW COLUMN ROW PT_ACC
1 NB5_4675 gene001-1 NM_012423 RPL13A 1 3 1 19
2 NB5_5036 gene001-2 NM_012423 RPL13A 2 3 1 19
3 NB5_5397 gene001-3 NM_012423 RPL13A 3 3 1 19
4 NB5_5758 gene001-4 NM_012423 RPL13A 4 3 1 19
5 NB5_6119 gene001-5 NM_012423 RPL13A 5 3 1 19
6 NB5_6480 gene001-6 NM_012423 RPL13A 6 3 1 19
7 NB5_2937 gene002 AF036892 ACTR 3 2 11 3
8 NB5_2509 gene003-1 NM_001101 ACTB 1 2 1 19
9 NB5_2870 gene003-2 NM_001101 ACTB 2 2 1 19
10 NB5_3231 gene003-3 NM_001101 ACTB 3 2 1 19
11 NB5_3592 gene003-4 NM_001101 ACTB 4 2 1 19
12 NB5_3953 gene003-5 NM_001101 ACTB 5 2 1 19
13 NB5_4314 gene003-6 NM_001101 ACTB 6 2 1 19
14 NB5_1683 gene004 NM_170731 BDNF 5 1 11 13
15 NB5_4020 gene005 U47741 CBP 6 2 11 3
16 NB5_4742 gene006 BC012037 DAN 2 3 11 3
17 NB5_1844 gene007 NM_000610 CD44 6 1 1 3
18 NB5_1312 gene008 BC005864 CDK4 4 1 1 13
19 NB5_3127 gene009 NM_005343 c-Ha-Ras 3 3 11 13
20 NB5_3117 gene010 NM_006565 CTCF 3 2 1 13

Total number of rows: 5340

Table truncated, full table size 264 Kbytes.






Download family Format
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Supplementary data files not provided

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