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Platform GPL18750 Query DataSets for GPL18750
Status Public on Jan 01, 2015
Title Agilent-034518 Ruditapes philippinarum 15K v2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Ruditapes philippinarum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Second R.philippinarum oligoarray

Arrays of this design have barcodes that begin with 16034518 or 2534518.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jun 02, 2014
Last update date Jan 01, 2015
Contact name Bassem Allam
Organization name Stony Brook University
Lab Marine Animal Disease Laboratory
Street address School of Marine and Atmospheric Sciences
City Stony Brook
State/province NY
ZIP/Postal code 11794-5000
Country USA
 
Samples (36) GSM1403013, GSM1403014, GSM1403015, GSM1403016, GSM1403017, GSM1403018 
Series (1)
GSE58198 Transcriptional changes in Manila clam (Ruditapes philippinarum) in response to brown ring disease

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_2429_PI426467536 CUST_2429_PI426467536 FALSE r14453|apoptosis-linked unmapped CAAAGAGCTGTCAACATACTGACGTTTGAATATAGAATACAAGTGCTTTTGCTATAAGTG
5 96 156 CUST_817_PI426467540 CUST_817_PI426467540 FALSE r22635|---NA--- unmapped AAGGGGTAACCGTTCCGTAAAAACCCCCTAAACGGTTAAACCCCCGTAAAAAACCCTAAA
6 96 154 CUST_92_PI426467536 CUST_92_PI426467536 FALSE i35|translation unmapped TATTTATTGTTTTCCCGACTTTCCGTAAGCCAGAATCATGGACCGAAATTGACAAAGAAA
7 96 152 CUST_3915_PI426467536 CUST_3915_PI426467536 FALSE r25646|c-type unmapped GAATCTGGAGATGGTATGACACAAACAGTCATGCAACATTTAAGAATGACTGTATTATAG
8 96 150 CUST_1731_PI426467536 CUST_1731_PI426467536 FALSE n980|serine-rich unmapped TAGGCCTGTCAGCACTGGCATTAAATCTGTTCATAATAAAATCATAATTATGCATGAAGC
9 96 148 CUST_3264_PI426467536 CUST_3264_PI426467536 FALSE r21345|sav2_strvl unmapped ACACGCTGAAGAACACATTTACCAGAACCTATGTCTTTTTTAAATACGCTAAGGGTCAAA
10 96 146 CUST_6970_PI426467536 CUST_6970_PI426467536 FALSE r37668|s-adenosylhomocysteine unmapped AGTTGCTCTTGCTCATTTGGATCATCTTGGAGTTAACTTGCCAAACTGTCTGACGACCAG
11 96 144 CUST_1469_PI426467536 CUST_1469_PI426467536 FALSE n5598|hypothetical unmapped ACAAGGGCACTAAATCACGCTTCATTTTATTGATCTGAGCACGTGTAGACTTTGTAACTC
12 96 142 CUST_571_PI426467536 CUST_571_PI426467536 FALSE n2383|PREDICTED: unmapped TAAAAGTAGCAAGAACAAACAACGATCCTCAAGTTATCGCTGGATACTTTCTTGAGTATG
13 96 140 CUST_3744_PI426467536 CUST_3744_PI426467536 FALSE r24843|defensin unmapped TACTTTTGCAAAGACCACAAGACAGCCTTAACACACTTATAGGCAAACTGAATATGTTAA
14 96 138 CUST_2594_PI426467536 CUST_2594_PI426467536 FALSE r15654|tempt_aplca unmapped GTGGATGCCATGGTCATAACTGTGTTGGAAAGTGAAACTAACATGTTTGAGAAAATAGAT
15 96 136 CUST_4908_PI426467540 CUST_4908_PI426467540 FALSE n546|---NA--- unmapped CCTAATTCTCATCATTGCAATTTCTGTACCAGTCATCATGTCCGGAATAAATTAATTGTG
16 96 134 CUST_185_PI426467540 CUST_185_PI426467540 FALSE r37578|---NA--- unmapped ATGGTTGGAATTGTCTCCCTTATGTTAAATGCCTATTATTCTCCAGAGTTACTTCTCCTC
17 96 132 CUST_6856_PI426467540 CUST_6856_PI426467540 FALSE r22346|---NA--- unmapped GTGACGTCACAAAAGTTTATGAATAATTGATAACGCCAAACTGACATGTTGCCATAAATG
18 96 130 CUST_1272_PI426467540 CUST_1272_PI426467540 FALSE r22380|---NA--- unmapped ATTGAGGGCTGGTTATTCTGATAATACTTTGCACAGTTCGCTATTTAGTCAGTAGCGACT
19 96 128 CUST_7963_PI426467536 CUST_7963_PI426467536 FALSE r9919|hematopoietic unmapped AGAGGATTAAATGTTTAAGTGGACCATTTTTGTAACCTATGCATACGTCGATGTCGTGAA
20 96 126 CUST_7816_PI426467536 CUST_7816_PI426467536 FALSE r9079|c1q unmapped GGACCAGGAAACCATCATTAAAAATCACGAGAAAGAAAATCAAGACTTCAAACTTCGATT

Total number of rows: 15744

Table truncated, full table size 2211 Kbytes.




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Supplementary file Size Download File type/resource
GPL18750_034518_D_GEO_20110526.txt.gz 624.2 Kb (ftp)(http) TXT

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