NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL18797 Query DataSets for GPL18797
Status Public on Nov 29, 2016
Title Agilent-028889 Tursiops truncatus AM_v1 [Probe name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Tursiops truncatus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16028889 or 2528889.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

 
Submission date Jun 13, 2014
Last update date Jun 13, 2014
Contact name Marion Neely
E-mail(s) marion.neely@gmail.com
Organization name National Ocean Services
Department NCCOS
Lab Marine Genomics Core Facility
Street address 331 Ft. Johnson Rd
City Charleston
State/province SC
ZIP/Postal code 29412
Country USA
 
Samples (94) GSM1412123, GSM1412124, GSM1412125, GSM1412126, GSM1412127, GSM1412128 
Series (1)
GSE58471 Seasonal Variation in the Skin Transcriptome of Bottlenose Dolphins (Tursiops truncatus)

Data table header descriptions
ID Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description

Data table
ID SPOT_ID CONTROL_TYPE GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION
GE_BrightCorner GE_BrightCorner pos
DarkCorner DarkCorner pos
AM-15709 AM-15709 FALSE Contig-c12730-1 chr1:0-60 gi-51822906-gb-CO892606-1- BovGen-20931 normal cattle brain Bos taurus cDNA clone RZPDp1056B2047Q 5' mRNA sequence-
AM-15201 AM-15201 FALSE Contig-c12221-2 chr1:0-60 gi-34167731-gb-CF365293-1- 835911 MARC 3PIG Sus scrofa cDNA 3' mRNA sequence- DHB13-HUMAN 17-beta hydroxysteroid dehydrogenase 13 OS-Homo sapiens GN-HSD17B13 PE-2 SV-1
AM-29776 AM-29776 FALSE SRR027949.203313 chr1:0-60 gi-50682818-gb-CO713123-1- DG14-1k18 DG14-muscle Canis lupus familiaris cDNA 3' mRNA sequence-
AM-18027 AM-18027 FALSE Contig-c15057-1 chr1:0-60 gi-182513624-gb-EW281901-2- rjca08c-k7-y1 jca Sus scrofa cDNA 5' mRNA sequence-
AM-12015 AM-12015 FALSE Contig-c9301-1 chr1:0-60 gi-42732372-gb-CK776122-1- 967266 MARC 3BOV Bos taurus cDNA 3' mRNA sequence-
AM-7057 AM-7057 FALSE Contig-c4728-1 chr1:0-60 gi-288277077-dbj-FS683856-1- FS683856 full-length enriched swine cDNA library adult longissimus Sus scrofa cDNA clone MLTL10072F05 5' mRNA sequence- NEBU-HUMAN Nebulin OS-Homo sapiens GN-NEB PE-1 SV-3
AM-6753 AM-6753 FALSE Contig-c4505-1 chr1:0-60
AM-7985 AM-7985 FALSE Contig-c5490-1 chr1:0-60 gi-148274722-gb-ES557465-1- est-e-glacialis672 RightWhaleSkin Eubalaena glacialis cDNA mRNA sequence- NP1L1-PONAB Nucleosome assembly protein 1-like 1 OS-Pongo abelii GN-NAP1L1 PE-2 SV-1
AM-15194 AM-15194 FALSE Contig-c12215-1 chr1:0-60 gi-60442160-gb-DN273550-1- 1152461 MARC 7BOV Bos taurus cDNA 3' mRNA sequence-
AM-23725 AM-23725 FALSE Contig-c20846-1 chr1:0-60
AM-18907 AM-18907 FALSE Contig-c15957-1 chr1:0-60
AM-18817 AM-18817 FALSE Contig-c15866-1 chr1:0-60
AM-5437 AM-5437 FALSE Contig-c3285-1 chr1:0-60 gi-40837863-gb-CK466586-1- 937808 MARC 4PIG Sus scrofa cDNA 5' mRNA sequence- CD2AP-HUMAN CD2-associated protein OS-Homo sapiens GN-CD2AP PE-1 SV-1
AM-19369 AM-19369 FALSE Contig-c16439-1 chr1:0-60 gi-57710464-gb-CX598718-1- CT020021B10H12 Equine Articular Cartilage cDNA Library Equus caballus cDNA clone CT020021B10H12 mRNA sequence- CACO2-MACFA Calcium-binding and coiled-coil domain-containing protein 2 OS-Macaca fascicularis GN-CALCOCO2 PE-2 SV-1
AM-13003 AM-13003 FALSE Contig-c10158-1 chr1:0-60 gi-167694605-gb-FE026624-1- C0009261H10-Q1KBM13R KN511 Ovis aries rectum and large colon from E- coli challenged and unchallenged animals Ovis aries cDNA clone C0009261H10 3' mRNA sequence-
AM-12693 AM-12693 FALSE Contig-c9940-1 chr1:0-60 gi-40385594-dbj-BP138185-1- BP138185 full-length enriched swine cDNA library adult liver Sus scrofa cDNA clone LVRM10001B07 5' mRNA sequence- PRDX6-BOVIN Peroxiredoxin-6 OS-Bos taurus GN-PRDX6 PE-1 SV-3
AM-613 AM-613 FALSE Contig-c377-1 chr1:0-60 gi-59786274-gb-DN109345-1- 1106920 MARC 4PIG Sus scrofa cDNA 5' mRNA sequence-
AM-26524 AM-26524 FALSE Contig-c23705-1 chr1:0-60 gi-51885465-emb-AJ817989-1- AJ817989 KN206 Bos sp- cDNA clone C0006007n12 mRNA sequence-

Total number of rows: 24478

Table truncated, full table size 3763 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap