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Platform GPL18812 Query DataSets for GPL18812
Status Public on Jan 01, 2015
Title Roche Nimblegen Fusarium graminearum 135K microarray
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Fusarium graminearum
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at
Submission date Jun 16, 2014
Last update date Jan 01, 2015
Contact name Yeon-Ki Kim
Phone 82-31-321-6351
Organization name GreenGene Biotech Inc.
Department GreenGene Biotech Inc.
Lab Genomics & Genetics Ins.
Street address 38-2 Namdong
City Yongin
State/province Kyonggido
ZIP/Postal code 449-728
Country South Korea
Samples (12) GSM1413201, GSM1413202, GSM1413203, GSM1413204, GSM1413205, GSM1413206 
Series (1)
GSE58543 Genome-wide expression profiling reveals putative target genes of the mating type loci (MAT1-1 and MAT1-2) in Fusarium graminearum during sexual devleopment

Data table header descriptions
SEQ_ID sequence identifier
SPOT_ID NCBI Conserved Domain database

Data table
f_gramin_000001 f_gramin_000001 UNKNOWN
f_gramin_000002 f_gramin_000002 pfam03302 gnlCDD|66945 pfam03302, VSP, Giardia variant-specific surface protein
f_gramin_000003 f_gramin_000003 UNKNOWN
f_gramin_000004 f_gramin_000004 UNKNOWN
f_gramin_000005 f_gramin_000005 pfam03302 gnlCDD|66945 pfam03302, VSP, Giardia variant-specific surface protein
f_gramin_000006 f_gramin_000006 UNKNOWN
f_gramin_000007 f_gramin_000007 pfam00067 gnlCDD|63955 pfam00067, p450, Cytochrome P450
f_gramin_000008 f_gramin_000008 UNKNOWN
f_gramin_000009 f_gramin_000009 COG1289 gnlCDD|31480 COG1289, COG1289, Predicted membrane protein [Function unknown]
f_gramin_000010 f_gramin_000010 COG4221 gnlCDD|33946 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
f_gramin_000011 f_gramin_000011 pfam00067 gnlCDD|63955 pfam00067, p450, Cytochrome P450
f_gramin_000012 f_gramin_000012 pfam00083 gnlCDD|63971 pfam00083, Sugar_tr, Sugar (and other) transporter
f_gramin_000013 f_gramin_000013 COG1215 gnlCDD|31408 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
f_gramin_000014 f_gramin_000014 pfam00083 gnlCDD|63971 pfam00083, Sugar_tr, Sugar (and other) transporter
f_gramin_000015 f_gramin_000015 pfam05721 gnlCDD|69256 pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)
f_gramin_000016 f_gramin_000016 COG0624 gnlCDD|30969 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
f_gramin_000017 f_gramin_000017 pfam00487 gnlCDD|64356 pfam00487, FA_desaturase, Fatty acid desaturase
f_gramin_000018 f_gramin_000018 cd00876 gnlCDD|57935 cd00876, Ras, Ras family
f_gramin_000019 f_gramin_000019 pfam04484 gnlCDD|68069 pfam04484, DUF566, Family of unknown function (DUF566)
f_gramin_000020 f_gramin_000020 pfam07380 gnlCDD|70831 pfam07380, Pneumo_M2, Pneumovirus M2 protein

Total number of rows: 13388

Table truncated, full table size 1731 Kbytes.

Download family Format
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Supplementary file Size Download File type/resource
GPL18812_071130_GGV_f_gramin_YK_Tiling.ncd.gz 249 b (ftp)(http) NCD
GPL18812_GGB_Fusarium_135k.ndf.gz 6.3 Mb (ftp)(http) NDF

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