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Platform GPL18848 Query DataSets for GPL18848
Status Public on Feb 18, 2015
Title Agilent-026819 Halo_30bp_span_genome
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Halobacterium salinarum NRC-1
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Schmid lab - Halobacterium ChIP-chip tiling array

Arrays of this design have barcodes that begin with 16026819 or 2526819.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jun 19, 2014
Last update date Feb 18, 2015
Contact name Amy K Schmid
E-mail(s) amy.schmid@duke.edu
Organization name Duke University
Department Biology
Lab Schmid
Street address 125 Science Dr.
City Durham
State/province NC
ZIP/Postal code 27707
Country USA
 
Samples (20) GSM1416978, GSM1416979, GSM1416980, GSM1416981, GSM1416982, GSM1416983 
Series (1)
GSE58696 A regulatory hierarchy controls the dynamic transcriptional response to extreme oxidative stress in archaea.

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
RANGE_GB
RANGE_START
RANGE_END
SEQUENCE Sequence
SPOT_ID Spot identifier

Data table
ID COL ROW NAME CONTROL_TYPE ACCESSION_STRING RANGE_GB RANGE_START RANGE_END SEQUENCE SPOT_ID
1 264 398 GE_BrightCorner pos CONTROL
2 264 396 DarkCorner pos CONTROL
3 264 394 DarkCorner pos CONTROL
4 264 392 CUST_22733_PI421996788 FALSE Chromosome AE004437.1 681961 682020 ACGAGGTGCGCGCGAGCAGATACGCGACGCCGACGACGAGCGCCACCGCGAACAGCAGGC
5 264 390 CUST_24814_PI421996788 FALSE Chromosome AE004437.1 744391 744450 GTCCTCGCCGATGGCCGCGACCTCGTCCTGCTCCTCGATGGCAAGCTCGTCGGGGGAGAG
6 264 388 CUST_33084_PI421996788 FALSE Chromosome AE004437.1 992491 992550 CCACCACGTGTGTCTGTACAGCCCGGCCGCCGGCGTGTTGTTCTCCGCGGATCTGGTGTT
7 264 386 CUST_1341_PI421996792 FALSE HALPNRC200 AE004438.1 40201 40260 CCGAGAGCTTCGTGAACGTCATCGACGCTTTTGGCGCCGGTGCAGACGACTTTGCCCGAT
8 264 384 CUST_31523_PI421996788 FALSE Chromosome AE004437.1 945661 945720 CGCGCACCACGTCGTCGTTGACCGCCTCAACGGCCGTCAAGACGCCCACGACGAACAGCC
9 264 382 CUST_1737_PI421996792 FALSE HALPNRC200 AE004438.1 52081 52140 CGCGGGCGTCCTCGGGATGGTGCTCGTCGATGGCTACCTCCCGTGGGCCGTCTTGGCTGG
10 264 380 CUST_57722_PI421996788 FALSE Chromosome AE004437.1 1731648 1731707 GCGAGACGTACAGCGCGTAGAACTGGAGGTGGGCCCTGTCCACGCGCCCCGGAGATGTGA
11 264 378 CUST_6433_PI421996788 FALSE Chromosome AE004437.1 192961 193020 CTCGTGCTCTCCGGTGGCCCCACCATGGCGGACATCGGCCACTGCCGGGAGTACCTCACA
12 264 376 CUST_5633_PI421996788 FALSE Chromosome AE004437.1 168961 169020 GCCCGCGAACACCAGGATCGCCGACCGAACCGACACGGTGATGTCTAGGATCCGCCAGAC
13 264 374 CUST_7553_PI421996788 FALSE Chromosome AE004437.1 226561 226620 CCCACCGGGCGGTCGTCGCCGCGGTCGCCGCCCACGACGACGGGGACGACTTCGCCGCGA
14 264 372 CUST_20633_PI421996788 FALSE Chromosome AE004437.1 618961 619020 CACTCGACGCCTCGGCGTCGACCGGCGACATCGACGGCTACGAGTGGACGCTTCTCGACC
15 264 370 CUST_16969_PI422542452 FALSE chrpNRC200 AE004438.1 203771 203831 CGACGACGCCGATGTACTCACCGGGTGAGACCGCAAGGGAGATGTCTTCGACGACCGGGG
16 264 368 CUST_1908_PI421996792 FALSE HALPNRC200 AE004438.1 57211 57270 GAGGCCGCGAACCCCAGGGGTAGCGTCGTTATTAGACATCTAAATCACGCTTCCACGCGT
17 264 366 CUST_2509_PI421996792 FALSE HALPNRC200 AE004438.1 75241 75300 CCGGCCATACGTCTACCGCCCACAGAACGCCGAGTAACGGCATCAGTGGCGTCAGTACGA
18 264 364 CUST_41685_PI421996788 FALSE Chromosome AE004437.1 1250538 1250597 GGACAGCGCCGCGGTGACGATCGCGGCCGCGGCCACCGCCGGCGTGTTCGCCGGGCAGGC
19 264 362 CUST_59664_PI421996788 FALSE Chromosome AE004437.1 1789908 1789967 TCGCAAACCTCCGAGAACACGTCAGCGAGTGGTCCGACCGCTACGTCGACCAGCAGGCAG
20 264 360 CUST_4785_PI421996788 FALSE Chromosome AE004437.1 143521 143580 GCGACGGCAGGTGGGGGTCGCGGTGTGGGGTCCGGCCGTACGCCGGCAGCCCGTCGGTGA

Total number of rows: 105072

Table truncated, full table size 14162 Kbytes.




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Supplementary data files not provided
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