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Platform GPL18909 Query DataSets for GPL18909
Status Public on Mar 16, 2015
Title Agilent-021463 ScBarcode v1.1 08-09-12
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Saccharomyces cerevisiae
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
 
Submission date Jul 08, 2014
Last update date Mar 18, 2015
Contact name Adrianna Skoneczna
E-mail(s) ada@ibb.waw.pl
Organization name Institute of Biochemistry and Biophysics
Department Laboratory of Mutagenesis and DNA Repair
Street address Pawinskiego 5A
City Warszawa
ZIP/Postal code 02-106
Country Poland
 
Samples (4) GSM1430006, GSM1430007, GSM1430008, GSM1430009
Series (1)
GSE59193 The importance of vesicular trafficking pathways in genome stability of diploid Saccharomyces cerevisiae cells

Data table header descriptions
ID
ID_REF_UP
ID_REF_DN
ProbeName
ORF
Gene Name
Alias
Description

Data table
ID ID_REF_UP ID_REF_DN ProbeName ORF Gene Name Alias Description
1 idu_00001 YAL001C YAL001C TFC3 TSV115|FUN24 Largest of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauB domain of TFIIIC that binds DNA at the BoxB promoter sites of tRNA and similar genes; cooperates with Tfc6p in DNA binding
2 idu_00002 YAL002W YAL002W VPS8 VPT8|FUN15 Membrane-associated protein that interacts with Vps21p to facilitate soluble vacuolar protein localization; component of the CORVET complex; required for localization and trafficking of the CPY sorting receptor; contains RING finger motif
3 idu_00003 YAL003W YAL003W EFB1 TEF5 "Translation elongation factor 1 beta; stimulates nucleotide exchange to regenerate EF-1 alpha-GTP for the next elongation cycle; part of the EF-1 complex, which facilitates binding of aminoacyl-tRNA to the ribosomal A site"
4 idu_00004 YAL004W YAL004W "Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps verified gene SSA1/YAL005C"
5 idu_00005 YAL005C YAL005C SSA1 YG100 "ATPase involved in protein folding and nuclear localization signal (NLS)-directed nuclear transport; member of heat shock protein 70 (HSP70) family; forms a chaperone complex with Ydj1p; localized to the nucleus, cytoplasm, and cell wall"
6 idu_00006 YAL007C YAL007C ERP2 "Protein that forms a heterotrimeric complex with Erp1p, Emp24p, and Erv25p; member, along with Emp24p and Erv25p, of the p24 family involved in ER to Golgi transport and localized to COPII-coated vesicles"
7 idu_00007 YAL008W YAL008W FUN14 Mitochondrial protein of unknown function
8 idu_00008 YAL009W YAL009W SPO7 "Regulatory subunit of Nem1p-Spo7p phosphatase holoenzyme, which regulates nuclear growth by controlling recruitment of Pah1p onto promoters of phospholipid biosynthetic genes; required for normal nuclear envelope morphology and sporulation"
9 idu_00009 YAL010C YAL010C MDM10 FUN37 Subunit of both the Mdm10-Mdm12-Mmm1 complex and the mitochondrial sorting and assembly machinery (SAM complex); functions in both the general and Tom40p-specific pathways for import and assembly of outer membrane beta-barrel proteins
10 idu_00010 YAL011W YAL011W SWC3 SWC1 "Protein of unknown function, component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae"
11 idu_00011 idd_00011 YAL012W YAL012W CYS3 STR1|FUN35|CYI1 "Cystathionine gamma-lyase, catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine"
12 idu_00012 YAL013W YAL013W DEP1 FUN54 "Transcriptional modulator involved in regulation of structural phospholipid biosynthesis genes and metabolically unrelated genes, as well as maintenance of telomeres, mating efficiency, and sporulation"
13 idu_00013 YAL014C YAL014C SYN8 SLT2|UIP2 Endosomal SNARE related to mammalian syntaxin 8
14 idu_00014 YAL015C YAL015C NTG1 SCR1|FUN33 "DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase involved in base excision repair, localizes to the nucleus and mitochondrion"
15 idu_00015 idd_00015 YAL016C-B YAL016C-B "Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"
16 idu_00016 idd_00016 YAL016W YAL016W TPD3 FUN32 "Regulatory subunit A of the heterotrimeric protein phosphatase 2A, which also contains regulatory subunit Cdc55p and either catalytic subunit Pph21p or Pph22p; required for cell morphogenesis and for transcription by RNA polymerase III"
17 idu_00017 YAL017W YAL017W PSK1 FUN31 One of two (see also PSK2) PAS domain containing S/T protein kinases; coordinately regulates protein synthesis and carbohydrate metabolism and storage in response to a unknown metabolite that reflects nutritional status
18 idu_00018 YAL018C YAL018C Putative protein of unknown function
19 idu_00019 YAL019W YAL019W FUN30 "Protein whose overexpression affects chromosome stability, potential Cdc28p substrate; homolog of Snf2p; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"
20 idu_00020 YAL020C YAL020C ATS1 KTI13|FUN28 "Protein required, with Elongator complex, Kti11p, and Kti12p, for modification of wobble nucleosides in tRNA; has a potential role in regulatory interactions between microtubules and the cell cycle"

Total number of rows: 6287

Table truncated, full table size 1343 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GPL18909_021463_D_GEO_20140703.txt.gz 1.1 Mb (ftp)(http) TXT
GPL18909_ScBarcode_v1.1_021463_Block_One_DN.gal.gz 332.2 Kb (ftp)(http) GAL
GPL18909_ScBarcode_v1.1_021463_Block_One_UP.gal.gz 327.2 Kb (ftp)(http) GAL

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