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Platform GPL19013 Query DataSets for GPL19013
Status Public on Jul 31, 2014
Title Agilent-042658 Clostridium acetobutylicum ATCC 824 and Arthrobacte sp. CGMCC 3584 8X15K array [Probe Name Version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Clostridium acetobutylicum; Arthrobacter sp.
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16042658 or 2542658.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent probe name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jul 30, 2014
Last update date Aug 01, 2014
Contact name qian jin
E-mail(s) qianjin@shbiochip.com
Organization name MSP
Street address libing road
City shanghai
ZIP/Postal code 201203
Country China
 
Samples (24) GSM1686164, GSM1686165, GSM1686166, GSM1686167, GSM1686168, GSM1686169 
Series (4)
GSE68899 Transcriptomic analysis of Clostridium acetobutylicum biofilm cells adsorbed onto fibrous matrix in biobutanol production [I]
GSE68901 Transcriptomic analysis of Clostridium acetobutylicum biofilm cells adsorbed onto fibrous matrix in biobutanol production
GSE99546 Transcriptomic analysis of Arthrobacter sp. CGMCC 3584 responding to dissolved oxygen for cAMP production

Data table header descriptions
ID Agilent probe name
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GENEID Gene_ID
GENESYMBOL Gene_Symbol
ORF Locus_tag
PROTEINID Protein_ID
PT_ACC
TARGETID
ACCESSION_STRING Accession String
GOs GO number
GO_NAME GO_name
ACCESSIONS Accessions
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOMAL_START Chromosomal Start
CHROMOSOMAL_END Chromosomal End
CHROMOSOME_STRAND Chromosomal Strand
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID NAME SPOT_ID CONTROL_TYPE GENEID GENESYMBOL ORF PROTEINID PT_ACC TARGETID ACCESSION_STRING GOs GO_NAME ACCESSIONS CHROMOSOMAL_LOCATION CHROMOSOMAL_START CHROMOSOMAL_END CHROMOSOME_STRAND DESCRIPTION SEQUENCE
GE_BrightCorner GE_BrightCorner GE_BrightCorner pos
DarkCorner DarkCorner DarkCorner pos
CUST_4270_PI428272168 CUST_4270_PI428272168 CUST_4270_PI428272168 FALSE Arthrobacter_orf1054 0 unmapped 991084 990284 - TCAGAGCTACCTGGACGACATCAAGGCCTTCTGGGACGAGTCGCTGGTGGAGAAGGTTTC
CUST_473_PI428272168 CUST_473_PI428272168 CUST_473_PI428272168 FALSE 1116663 nrdD CA_C0480 NP_347120.1 NP_347120.1 Clostridium acetobutylicum_ATCC_824:554397-556505 Clostridium acetobutylicum_ATCC_824:554397-556505 gi|15893298 NC_003030.1 554397 556505 + anaerobic ribonucleoside triphosphate reductase TAAACAAGGTACATGGGGAGTTGGTTTTATAGGACTGGCTGAAACACTTGTAGCCCTTAC
CUST_8023_PI428272168 CUST_8023_PI428272168 CUST_8023_PI428272168 FALSE Arthrobacter_orf976 Arthrobacter_orf976 4 "P:oxidation reduction; F:cofactor binding; F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; F:zinc ion binding" unmapped 928512 927364 - Zn-dependent alcohol dehydrogenase [Arthrobacter phenanthrenivorans Sphe3] CTCAACGAAGCCTACGACCGGATGGTGGCAGGCGATGTGAAATACCGGTTTGTGCTGGAC
CUST_4216_PI428272168 CUST_4216_PI428272168 CUST_4216_PI428272168 FALSE Arthrobacter_orf3106 6 F:glycine dehydrogenase (decarboxylating) activity; F:pyridoxal phosphate binding; P:oxidation reduction; P:glycine decarboxylation via glycine cleavage system; P:L-serine metabolic process; P:threonine metabolic process unmapped 3057657 3054805 - glycine dehydrogenase (decarboxylating) subunit beta; glycine dehydrogenase (decarboxylating) subunit alpha [Arthrobacter phenanthrenivorans Sphe3] GAGGACCTCGCGGAGATCGACCGCTTCATCGAAGCCATGATCACCATCCGCAAGGAAATC
CUST_7363_PI428272168 CUST_7363_PI428272168 CUST_7363_PI428272168 FALSE Arthrobacter_orf4259 Arthrobacter_orf4259 5 "F:transcription factor activity; F:sequence-specific DNA binding; P:regulation of transcription, DNA-dependent; C:transcription factor complex; P:regulation of transcription" unmapped 4151253 4150780 - AsnC family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] ATGCCGGGCGTGCTGGATACCCAGACGTTCCTGGTGTTTGAGGATCTGGATACACGGTAG
CUST_3124_PI428272168 CUST_3124_PI428272168 CUST_3124_PI428272168 FALSE 1119357 CA_C3175 CA_C3175 NP_349772.1 NP_349772.1 Clostridium acetobutylicum_ATCC_824:3311688-3311873 Clostridium acetobutylicum_ATCC_824:3311688-3311873 gi|15893298 NC_003030.1 3311688 3311873 + hypothetical protein CGGAGAAAAGTAAACAAAAATATGCTTTCAGAGAGTGGGAGTTGGTGCGAACCCATAAGC
CUST_4547_PI428272168 CUST_4547_PI428272168 CUST_4547_PI428272168 FALSE Arthrobacter_orf1339 4 C:plasma membrane succinate dehydrogenase complex; P:tricarboxylic acid cycle; F:succinate dehydrogenase (ubiquinone) activity; P:oxidative phosphorylation unmapped 1298897 1299196 + succinate dehydrogenase subunit C [Arthrobacter phenanthrenivorans Sphe3] GTGATCTTTTTCTTCTTGTTGGTCCACGTTTTGGACACCTCCTTGGTGCGGGTGTCTCCC
CUST_6220_PI428272168 CUST_6220_PI428272168 CUST_6220_PI428272168 FALSE Arthrobacter_orf3042 Arthrobacter_orf3042 7 F:nucleoside-triphosphatase activity; P:cell cycle; C:integral to membrane; F:ATP binding; F:DNA binding; P:cell division; P:chromosome segregation unmapped 2994844 2997753 + "DNA segregation ATPase, FtsK/SpoIIIE family [Arthrobacter phenanthrenivorans Sphe3]" CTACGCCGAAGACCTGGTTGCGGCAGACCTTGACCAGCGGAAGCAGAACGTCGAATATTA
CUST_4799_PI428272168 CUST_4799_PI428272168 CUST_4799_PI428272168 FALSE Arthrobacter_orf15 1 F:hydrolase activity unmapped 8811 7918 - hypothetical protein Asphe3_30090 [Arthrobacter phenanthrenivorans Sphe3] GAATCCGACTTCCACGCACTGACTGCCACCCAGTCGGGAATCGTTGCCTTCGACGGTGTA
CUST_1237_PI428272168 CUST_1237_PI428272168 CUST_1237_PI428272168 FALSE 1117437 CA_C1254 CA_C1254 NP_347885.1 NP_347885.1 Clostridium acetobutylicum_ATCC_824:1398754-1400622 Clostridium acetobutylicum_ATCC_824:1398754-1400622 gi|15893298 NC_003030.1 1398754 1400622 + Fe-S oxidoreductase TTTAATAAGTGAAAACGAAAAGGCCAAGGAAGAGGTAGTTACGCCAGATTGTAGGGGAGG
CUST_1664_PI428272168 CUST_1664_PI428272168 CUST_1664_PI428272168 FALSE 1117869 CA_C1686 CA_C1686 NP_348312.1 NP_348312.1 Clostridium acetobutylicum_ATCC_824:1836109-1836759 Clostridium acetobutylicum_ATCC_824:1836109-1836759 gi|15893298 NC_003030.1 1836109 1836759 + S-adenosylmethionine-dependent methyltransferase AGAGCTTGGTACGGCAATAGGTTATTCTGCATCACTTATGGCTTTGAATTCAAATGCACA
CUST_2862_PI428272168 CUST_2862_PI428272168 CUST_2862_PI428272168 FALSE 1119091 CA_C2908 CA_C2908 NP_349510.1 NP_349510.1 Clostridium acetobutylicum_ATCC_824:c3044332-3043298 Clostridium acetobutylicum_ATCC_824:c3044332-3043298 gi|15893298 NC_003030.1 3043298 3044332 - spore coat protein cotS related ACTTAAGCATAAGTTCATTTGGATTGGGACAGCTTCATAGTGCGTCAGAGGGATTTAGGT
CUST_4807_PI428272168 CUST_4807_PI428272168 CUST_4807_PI428272168 FALSE Arthrobacter_orf1608 8 C:cytoplasm; F:alanine-tRNA ligase activity; P:alanyl-tRNA aminoacylation; F:metal ion binding; F:ATP binding; F:tRNA binding; P:alanine metabolic process; P:aspartate metabolic process unmapped 1555421 1558099 + alanyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3] TCGAGGAAGTCTCCAACCTGGCCATCCGGAACAACTTCCGGGTGGAAACCAAGGTCATGG
CUST_4556_PI428272168 CUST_4556_PI428272168 CUST_4556_PI428272168 FALSE Arthrobacter_orf1349 3 P:RNA metabolic process; C:intracellular; F:ligase activity unmapped 1308581 1307862 - "2',5' RNA ligase family protein [Arthrobacter phenanthrenivorans Sphe3]" GTCTTCATCAATGTGGAGGACGGGTTCGAGGACTGCGTTGACCTCCACGAAAAGCTCCAG
CUST_4345_PI428272168 CUST_4345_PI428272168 CUST_4345_PI428272168 FALSE Arthrobacter_orf1132 2 F:5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity; P:methionine biosynthetic process unmapped 1069645 1068572 - hypothetical protein Asphe3_25880 [Arthrobacter phenanthrenivorans Sphe3] GACATCAACGTCCTTGCCGATGTAGCGGGAGCCGAGGAAAATTCTGCCGCCGAGCTCAAG
CUST_4518_PI428272168 CUST_4518_PI428272168 CUST_4518_PI428272168 FALSE Arthrobacter_orf1309 4 P:transport; C:plasma membrane; C:integral to membrane; F:transporter activity unmapped 1270643 1271611 + inner-membrane translocator [Arthrobacter chlorophenolicus A6] TACAGCATGAACCCCTTCCCTGAAGGCTCCTACTTCGGCATGAACAACCGCGATTTCTTC
CUST_7758_PI428272168 CUST_7758_PI428272168 CUST_7758_PI428272168 FALSE Arthrobacter_orf697 Arthrobacter_orf697 1 C:membrane unmapped 651756 652697 + hypothetical protein SCAB_0561 [Streptomyces scabiei 87.22] GATGTAACAACCATCCTGCCTGTGCAGGTCTATAAGGAAGCCTTTCGATTTGGTGACTTC
CUST_1665_PI428272168 CUST_1665_PI428272168 CUST_1665_PI428272168 FALSE 1117870 CA_C1687 CA_C1687 NP_348313.1 NP_348313.1 Clostridium acetobutylicum_ATCC_824:1836752-1837972 Clostridium acetobutylicum_ATCC_824:1836752-1837972 gi|15893298 NC_003030.1 1836752 1837972 + collagenase protease TGACAGGAAGAGATTCCAATAGGGGTGCTTGTGCACAACCATGCAGATATAAGTATTCAT

Total number of rows: 8323

Table truncated, full table size 2885 Kbytes.




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Supplementary file Size Download File type/resource
GPL19013_042658_D_GEO_20120816.txt.gz 582.1 Kb (ftp)(http) TXT

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