GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Platform GPL19049

Query DataSets for GPL19049

Status

Public on Jul 05, 2017

Title

Agilent-024282 Candida albicans 1245169391301

Technology type

in situ oligonucleotide

Distribution

custom-commercial

Organism

Candida albicans

Manufacturer

Agilent Technologies

Manufacture protocol

see manufacturer's web site at http://www.agilent.com/

Description

Arrays of this design have barcodes that begin with 16024282 or 2524282.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

Submission date

Aug 05, 2014

Last update date

Jan 04, 2021

Contact name

Tobias Weil

E-mail(s)

tobias.weil@fmach.it

Organization name

Fondazione Edmund Mach

Street address

Via E. Mach, 1

City

S. Michele all'Adige (TN)

ZIP/Postal code

38010

Country

Italy

Samples (16)

More...

GSM1465299, GSM1465300, GSM1465301, GSM1465302, GSM1465305, GSM1465306

Series (2)

GSE60121	Mistranslation accelerates the evolution of antifungal drug resistance in Candida albicans [Gene expression]
GSE60122	Mistranslation accelerates the evolution of antifungal drug resistance in Candida albicans

Relations

Alternative to

Data table header descriptions
ID	Agilent feature number
COL	Column
ROW	Row
NAME	probe name
CONTROL_TYPE
ACCESSION_STRING	Candida Genome Database ID http://www.candidagenome.org//
CHROMOSOMAL_LOCATION
SEQUENCE
SPOT_ID

Data table
ID	COL	ROW	NAME	CONTROL_TYPE	ACCESSION_STRING	CHROMOSOMAL_LOCATION	SEQUENCE	SPOT_ID
1	266	170	GE_BrightCorner	pos				control
2	266	168	DarkCorner	pos				control
3	266	166	DarkCorner	pos				control
4	266	164	DarkCorner	pos				control
5	266	162	DarkCorner	pos				control
6	266	160	DarkCorner	pos				control
7	266	158	DarkCorner	pos				control
8	266	156	DarkCorner	pos				control
9	266	154	DarkCorner	pos				control
10	266	152	DarkCorner	pos				control
11	266	150	DarkCorner	pos				control
12	266	148	CUST_1433_PI362308700	FALSE	gb_orf19.6475\|gb_orf19.6475	unmapped	TATAATTCTGGTGAAATTTCCAGACCGGAAGGTCCACCCCAGGCACATACAAAATCTTAT	gb_orf19.6475\|gb_orf19.6475
13	266	146	CUST_7002_PI362308700	FALSE	gb_orf19.7512\|gb_orf19.7512	unmapped	TTACTGTTAGATTACTTCAAGAGTTTGAGCATTTGACTATGGATGCAGAAACTCGCTACC	gb_orf19.7512\|gb_orf19.7512
14	266	144	CUST_11903_PI362308700	FALSE	gb_orf19.7124\|gb_orf19.7124	unmapped	ACGGCAAGATTGATGATATGTTGGCACAAATGCAAGGTTTGAGTATAACTTCTTTAGGAA	gb_orf19.7124\|gb_orf19.7124
15	266	142	CUST_6689_PI362308700	FALSE	gb_orf19.7403\|gb_orf19.7403	unmapped	GAAACAAAAGTTTATAAAGACCTCAAATTTAGGTTGAATGGATTGAGGGCAAGTAAGCTC	gb_orf19.7403\|gb_orf19.7403
16	266	140	NA	ignore				NA
17	266	138	CUST_8587_PI362308700	FALSE	gb_orf19.3329\|gb_orf19.3329	unmapped	GGAATATCGATTACTGCGGTGTGGACTTTTGCATTTGCAAGTGACTATCTTAATTTATAG	gb_orf19.3329\|gb_orf19.3329
18	266	136	CUST_11332_PI362308700	FALSE	gb_orf19.1474\|gb_orf19.1474	unmapped	ACAACCATTACAGTCACAACCAACTGGTATGGGCTTTGGAAATGCACCATTGCAATCACA	gb_orf19.1474\|gb_orf19.1474
19	266	134	NA	ignore				NA
20	266	132	NA	ignore				NA

Total number of rows: 45220

Table truncated, full table size 4567 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary file	Size	Download	File type/resource
GPL19049_024282_D_GEO_20090616.txt.gz	1.1 Mb	(ftp)(http)	TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |