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Platform GPL19091 Query DataSets for GPL19091
Status Public on Aug 26, 2014
Title Agilent-026873 Spodoptera frugiperda SpodoArray (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Spodoptera frugiperda
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site at http://www.agilent.com/.
 
Description Probes were designed from EST records in Spodobase (http://bioweb.ensam.inra.fr/spodobase/).

Arrays of this design have barcodes that begin with 16026873 or 2526873.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Aug 18, 2014
Last update date Sep 03, 2014
Contact name Tamer Zaki Salem
E-mail(s) tsalem@zewailcity.edu.eg
Phone +2-01121103671
Organization name Zewail city of science and technology
Department Biomedical sciences
Lab Molecular biology
Street address Shiekh Zayed
City 6th of october
State/province Giza
ZIP/Postal code 12588
Country Egypt
 
Relations
Alternative to GPL19092

Data table header descriptions
ID Agilent Feature Number
COL Column
ROW Row
NAME Name
CONTROL_TYPE Control type
REFSEQ RefSeq Accession for best BLAST hit
SPODOBASE_ID Spodobase identifier
ACCESSION_STRING Accession string
CHROMOSOMAL_LOCATION Chromosomal location
DESCRIPTION Description for best BLAST hit
SEQUENCE Sequence
SPOT_ID Spot identifier

Data table
ID COL ROW NAME CONTROL_TYPE REFSEQ SPODOBASE_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE SPOT_ID
1 266 170 GE_BrightCorner pos --GE_BrightCorner
2 266 168 DarkCorner pos --DarkCorner
3 266 166 DarkCorner pos --DarkCorner
4 266 164 DarkCorner pos --DarkCorner
5 266 162 DarkCorner pos --DarkCorner
6 266 160 DarkCorner pos --DarkCorner
7 266 158 DarkCorner pos --DarkCorner
8 266 156 DarkCorner pos --DarkCorner
9 266 154 DarkCorner pos --DarkCorner
10 266 152 DarkCorner pos --DarkCorner
11 266 150 DarkCorner pos --DarkCorner
12 266 148 Spodo_PID_15688 FALSE Sf1P06518-5-1 Sf1P06518-5-1 unmapped CCATTTGTCCGATGTGTTCTCCCTATCCTATGTACTTTACGAGTCAATAAAAATATAACT Spodo_PID_15688
13 266 146 Spodo_PID_03926 FALSE Sf1H01925-3-1 Sf1H01925-3-1|gi|87248621|gb|ABD36363.1 unmapped thymidylate synthase isoform 2 [Bombyx mori] GTTGGAATGGACTTTGATGTCAAGCCAAATTGGTAAGTTGCAAATGTTCAAAATTCTTTC Spodo_PID_03926
14 266 144 Spodo_PID_05298 FALSE Sf1H06798-3-1 Sf1H06798-3-1 unmapped CTGCGCGTTGTTCAAATCAGGTCTGAATGTTTGTATGTATGTAGTTTATTTATGATTCCA Spodo_PID_05298
15 266 142 Spodo_PID_23115 FALSE Sf1P15374-5-1 Sf1P15374-5-1 unmapped GGATCTTGGACGATGACAACAGTAGTATCTGATTAGATACCATATTGAAATTCTAAGTAC Spodo_PID_23115
16 266 140 Spodo_PID_15948 FALSE XP_320585.1 Sf1P06780-5-1-Contig1 Sf1P06780-5-1-Contig1|gi|31240343|ref|XP_320585.1 unmapped AGAP011946-PA [Anopheles gambiae str. PEST] TAAATGAAAGGAAAGATCCTAGACAAATATTTTACGGATTGGAGCCTGGTTGGGTCATCA Spodo_PID_15948
17 266 138 Spodo_PID_23080 FALSE Sf1P15319-5-1-Contig1 Sf1P15319-5-1-Contig1 unmapped GAGCGCACCCCACTGCCATTTGTATTATTTTTATACAAAAGAAATTCAGAATGTTAACAG Spodo_PID_23080
18 266 136 Spodo_PID_29639 FALSE XP_393677.2 Sf1P25053-5-1 Sf1P25053-5-1|gi|66517077|ref|XP_393677.2 unmapped PREDICTED: similar to Downstream of son gene protein homolog [Apis mellifera] GAGCCTATTCCAGAGAAGAAATACAAGTATATACCCATTGATTGGGCATTAAAAACTAAG Spodo_PID_29639
19 266 134 NA ignore --ignore
20 266 132 Spodo_PID_17344 FALSE XP_969600.2 Sf1P08269-5-1 Sf1P08269-5-1|gi|189234130|ref|XP_969600.2 unmapped PREDICTED: similar to peroxinectin [Tribolium castaneum] ATAACTACATACAATGACGCGCCTTCGATCATGTATGGGTGGCGTGACTGGTTGTACATT Spodo_PID_17344

Total number of rows: 45220

Table truncated, full table size 8279 Kbytes.




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