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Platform GPL19196 Query DataSets for GPL19196
Status Public on Sep 18, 2014
Title NRC-BRI C. albicans expression microarray V2.0
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Candida albicans
Manufacturer National Research Council Canada - Biotechnology Research Institute
Manufacture protocol Probe design was done using a sliding window of 70 bp moved from the 3' -> 5' end of the target sequence. Self-annealing was calculated at each position as well as the GC count. A pre-computed cumulative mask of all the significant alignments found in the genome was made to favour regions that are unique for each genomic region. Oligos were resuspended at 22 µM concentration in 50% DMSO and spotted on Corning Ultragaps slides with a BioRad ChipWriter Pro microarray spotter equipped with 48 SMP3 pins (Telechem ArrayIt). UV crosslinking (600 mJ) was performed in a Stratagene UV Stratalinker.
Support glass
Coating aminosilane
 
 
Submission date Sep 16, 2014
Last update date Sep 18, 2014
Contact name Faiza Tebbji
E-mail(s) t_faiza2000@yahoo.fr
Organization name CHU Québec
Street address 2705 Boulevard Laurier
City Québec
ZIP/Postal code G1V 4G2
Country Canada
 
Samples (22) GSM1505537, GSM1505538, GSM1505539, GSM1505540, GSM1505541, GSM1716890 
Series (7)
GSE61469 A functional portrait of Med7 and the Mediator complex in Candida albicans [expression]
GSE61519 A functional portrait of Med7 and the Mediator complex in Candida albicans
GSE70085 Negative Regulation of Filamentous Growth in Candida albicans by Dig1p

Data table header descriptions
ID
ORF Open Reading Frame ID
GeneSymbol Gene Symbol
EntrezGene EntrezGene ID
Description Description
Dbid Other database identifiers
SEQUENCE Oligonucleotide Sequence
SPOT_ID

Data table
ID ORF GeneSymbol EntrezGene Description Dbid SEQUENCE SPOT_ID
orf19.10 CaO19.10 ALK8 3648226 Alkane-inducible cytochrome P450; catalyzes hydroxylation of lauric acid to hydroxylauric acid; overproduction causes fluconazole resistance in a wild-type background and causes multidrug resistance in a cdr1 cdr2 double mutant background orf19.7683|IPF27231.1|IPF11568.1|Contig4-2506_0001|orf6.1706|CA0651|CaO19.7683|CaO19.10 TTTGCAATTGACAGAAGGTATAGAATATCCTCCAGCTAAGTTGACTCATTTAACAATGTGTATGTTTGAT
orf19.100 CaO19.100 3644046 Predicted ORF in Assemblies 19, 20 and 21 orf19.7747|IPF10462.3|IPF29954.1|Contig4-2197_0007|orf6.2503|orf6.490|CA0093|CaO19.100|IPF29954|IPF19980.repeat2|IPF10462.2 GTAAGTTGGGGAGATAAAGTGTTAGGGAGTGTGAATGAAGCTAAACATAACGAGTTTAAAAGGAAATTTT
orf19.1002 CaO19.1002 3647196 Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) orf19.8618|IPF26289.1|IPF15371.2|orf6.5795|CA3517|CaO19.8618|LPF8|CaO19.1002|IFA22 GGAGTCAGCTTCTATAGATGTTGTTATTCTGCAAGAAGATACATGTATTACTCAAAAACCCAAACGAATA
orf19.1003 CaO19.1003 3647160 Predicted ORF from Assembly 19; merged with orf19.1005 in Assembly 20 orf19.8619|IPF19532.1|IPF18326.1|orf6.5794|CA6182|CaO19.1003|LPF9|CaO19.8619|IPF18326.3f TTCAATATCCTTAGTTGATGCAAAGAAAAAATTACTTAATTTGGAACACAATGGTAACGACCACCAGTAG
orf19.1004 CaO19.1004 Predicted ORF from Assembly 19; removed from Assembly 20 orf19.8620|IPF26296.1|IPF15152.3|orf6.5793 AATGAAAAATTGTCAAATCAAATTAATGGAATTCTTGGGAAATTCCCACCGCCAATACCACCTGAGAATC
orf19.1005 CaO19.1005 3648377 Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms orf19.8619|IPF19532.1|IPF18326.1|IPF15368.2|Contig4-1962_0003|orf6.5794|orf6.581|CA6182|orf19.1003|CaO19.1005|LPF10 TTCAATATCCTTAGTTGATGCAAAGAAAAAATTACTAAATTTGGAACACAATGGTAACGACCACCAGTAG
orf19.1006 CaO19.1006 Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth; merged with orf19.562 in Assembly 20 orf19.8621|IPF26285.1|IPF19213.1|orf6.614|FGR13 CAAAATGCTAATAAATTTACTTATTTTAAACAAAAAATTGCAAAAACTTTGGTTCCCCCTAAAAAAATTA
orf19.1007 CaO19.1007 3648128 Putative transcription factor with bZIP DNA-binding motif orf19.8622|IPF26283.1|IPF3746.1|Contig4-3028_0026|orf6.613|CA0133|KCS1|CaO19.1007|CaO19.8622|IPF3746 CAACACCCTGATTCACCAGACTTGGGTTATTTACGAGGGTTAAATTCGTTAATTGTTTATTTTACATTAA
orf19.1008 CaO19.1008 3648121 Predicted ORF in Assemblies 19, 20 and 21 IPF29604.1|Contig4-3028_0025|orf6.612|CaO19.1008 ATGTGGGCCATTTTTTGACCAGCTCATCTAATCATTCAAAATTCGGATACCGTGTCTATAGTATAAAGAG
orf19.1009 CaO19.1009 3648122 Predicted ORF in Assemblies 19, 20 and 21 IPF26287.1|Contig4-3028_0022|Contig4-3028_0024|orf6.611|CaO19.1009 CTACTTGCTTATGCTTTTTATCAACAAACTCTTTCACGTACCACATTCCCTTTTGGAATCCTTGCCAAAA
orf19.101 CaO19.101 RIM9 3644047 Protein required for alkaline pH response via the RIM101 signaling pathway; ortholog of S. cerevisiae RIM9 and A. nidulans palI orf19.7748|IPF20039.1|IPF10461.2|Contig4-1178_0001|orf6.2504|orf6.491|CA1150|CaO19.101 AGTTTTGGAACGATAATGCCAGTGATGATGGATTCTATGTTTATACGGATGGATTTTACACTAGGAATGG
orf19.1010 CaO19.1010 MNT3 3648123 Protein with similarity to mannosyltransferases; transcription elevated in cyr1, chk1, nik1, and sln1 homozygous null mutants; fungal-specific (no human or murine homolog); possibly an essential gene, disruptants not obtained by UAU1 method orf19.8624|KTR1|IPF19565.2|IPF29601.1|Contig4-3028_0019|orf6.2170|orf6.220|KTR3|CA0033|CaO19.1010|CA0952|MNT3.3eoc|IPF19564.1 GTGTACTTGTAACCCCGATGAAGATTTTACATGGAGTGACCTTAGTTGTACTAACCATTTCTTGAACATT
orf19.1011 CaO19.1011 3648124 Predicted ORF in Assemblies 19, 20 and 21 orf19.8625|IPF26282.1|IPF3740.1|Contig4-3028_0018|orf6.2169|CA0951|MNN21|CaO19.8625|CaO19.1011|MNN6 CAAATTACAACATCAAGTTTTGGAAAAGGGGCCAGAGATTTTATTTGTCCATGCTAATTTCCCTAAATTG
orf19.1012 CaO19.1012 3648132 Predicted ORF in Assemblies 19, 20 and 21 orf19.8626|IPF26284.1|IPF3737.2|Contig4-3028_0013|orf6.2168|CA0950|APS1|CaO19.1012|CaO19.8626|IPF3737 CCTGCAAAAGGAGAAATCCAAGATTATACGAGAATTAAGCACAATAATATTATCAAGACGAGCCAAAATG
orf19.1013 CaO19.1013 3648133 Predicted ORF from Assembly 19; merged with orf19.5289 in Assembly 20 orf19.8627|IPF26286.1|IPF29603.1|orf6.2167|CaO19.1013|CaO19.8627 GGCACATACAAATATTCGTCAGAAAAAAAGGGAACAGGAGTCAAACAAAGTCAAACAAAAAAGTATTAGC
orf19.1014 CaO19.1014 3648356 Predicted ORF from Assembly 19; removed from Assembly 20 IPF19212.2|orf6.5549|orf6.616|CaO19.1014 TAGAAAAGTTATACATTTATTAGATGACAGGATGGCCCAAGAGTTTGCTACTCGAAGAGAAAGCAACATA
orf19.1016 CaO19.1016 3648358 Predicted ORF from Assembly 19; removed from Assembly 20 IPF19211.1|orf6.618|URM1|CaO19.1016 TGATACCATTCGAAGAAGGTGAAGCTACAGTTGCTGATTTGATAACCTACATCACCAAGAATATAATATC
orf19.1017 CaO19.1017 3648359 Predicted ORF from Assembly 19; removed from Assembly 20 IPF17921.2|orf6.619|CA0134|CaO19.1017|VPS185|VPS185.5 TGTATTCTTTTGCTGTGGAAAAAAATCTCTGTTCCTACTACGTGTCTCCAAAATTAGTTAACAAACAGGT
orf19.1018 CaO19.1018 3648360 Predicted ORF from Assembly 19; removed from Assembly 20 IPF17919.2|orf6.620|CaO19.1018|TEL1 TGGAGTGGAAGGAATGTTTAAGAAATCATGTGAACATACATTAAGAGTGTTGAGAACAAACAAGGAACAC
orf19.1019 CaO19.1019 3648331 Predicted ORF from Assembly 19; removed from Assembly 20; merged with orf19.5718 in Assembly 21 IPF11032.1|Contig4-1709_0001|Contig4-1709_0003|orf6.2203|orf6.3801|orf6.4426|orf6.513|orf6.621|CA0135|VPS182|VPS184|CaO19.1019 TGCATCACATCGTCAATGTTTCAATGCTTGATTTGAAAGACCTTTTACCGTTATTTCCGGAAACGATACT

Total number of rows: 6806

Table truncated, full table size 1935 Kbytes.




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