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Platform GPL19297 Query DataSets for GPL19297
Status Public on Oct 10, 2016
Title Agilent-021332 Rat_CpG_Island 2x105K Array [Probe Name Version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Rattus norvegicus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Rat CpG Microarray. probes are collected from agilent hd-chip data base
Arrays of this design have barcodes that begin with 16021332 or 2521332.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Probe Name.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 15, 2014
Last update date Oct 11, 2016
Contact name Kazuhiro DAINO
E-mail(s) daino.kazuhiro@qst.go.jp
Organization name National Institutes for Quantum and Radiological Science and Technology
Street address 4-9-1 Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Samples (44) GSM1526386, GSM1526387, GSM1526388, GSM1526389, GSM1526390, GSM1526391 
Series (3)
GSE62383 DNA Methylation Patterns in Rat Mammary Carcinomas Induced by Pre- and Post-Pubertal Irradiation
GSE96565 Global DNA methylation profiling of radiation-induced rat mammary carcinomas
GSE96567 Genome-wide profiling of DNA methylation and gene expression in radiation-induced rat mammary carcinomas
Relations
Alternative to GPL19288 (Feature Number Version)

Data table header descriptions
ID Probe Name
CONTROL_TYPE Control type
GenBankAccession
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location.rn4:RGSCv3.4:Nov2004
chromosome
RANGE_GB
RANGE_START
RANGE_END
CYTOBAND Cytoband
DESCRIPTION Description
SEQUENCE sequence
SPOT_ID

Data table
ID CONTROL_TYPE GenBankAccession GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION chromosome RANGE_GB RANGE_START RANGE_END CYTOBAND DESCRIPTION SEQUENCE SPOT_ID
DarkCorner pos control
A_45_P17816283 FALSE chr3:92472576-92472620 chr3 NC_005102.2 92472576 92472620 rn|q33 AGAGGACGGCGAATGCGGCTAGAGAGACCGCGTGCACCATAAAGA
A_45_P09183955 FALSE chr13:76594807-76594854 chr13 NC_005112.2 76594807 76594854 rn|q22 ATATCTGTCCGTTACGGTTTTAGGCCTTGTGGGAATGAAGCTCCCTAA
A_45_P17664111 FALSE chr3:59096066-59096110 chr3 NC_005102.2 59096066 59096110 rn|q23 CTGCGAGAGCTGACGCCTACGCTGCACCTTTCAGGGAATCCGGGA
A_45_P10526343 FALSE chr16:19091861-19091905 chr16 NC_005115.2 19091861 19091905 rn|p14 AAGATTGTGAGTGGGAGACGCTGAGTCCACGAAGTCCGTGCACAA
A_45_P00518682 FALSE chr1:118922031-118922075 chr1 NC_005100.2 118922031 118922075 rn|q22 GATGCTGTGGTCCCAACGCTCCCTTTCGGACCGTGTGGAGCTCTG
A_45_P07916944 FALSE chr10:56687163-56687210 chr10 NC_005109.2 56687163 56687210 rn|q24 ATAAAGGGGTTAAGGAGACTTTCCTCAGGGTCAGGTCATCTGTTTGAC
A_45_P17384933 FALSE chr3:3472927-3472986 chr3 NC_005102.2 3472927 3472986 rn|p13 AATGTGCACAGAGAAAATATGCAGACACAGAAGAAGATTATAAACGGTTGAAAATGACGG
A_45_P06058647 FALSE chr7:75528818-75528866 chr7 NC_005106.2 75528818 75528866 rn|q22 GTGCAACAGCAATTACACAGAGAAGAGAACTTCGTGCCTCAGAAAGGTT
A_45_P01642452 FALSE chr2:84726385-84726439 chr2 NC_005101.2 84726385 84726439 rn|q22 TCTTTTTTTGTTGTTTGTACCTGGATGCGGTTGCCTGGAGTTGGATTTTAACTTT
A_45_P00845420 FALSE chr1:185974993-185975037 chr1 NC_005100.2 185974993 185975037 rn|q36 CTGTGCAGTTGCAGCCTGACGTCACTACAAAGAACGCAGAAGTTC
A_45_P23995843 FALSE chr13:94185950-94185994 chr13 NC_005112.2 94185950 94185994 rn|q26 TTTGAAAGAGTGGTGCGCTGATTTTCTGGGTGTTCTCGCAGAAGC
A_45_P06973637 FALSE chr8:115120257-115120306 chr8 NC_005107.2 115120257 115120306 rn|q32 CTCCTCTACGAAAACATTTGCAAGTTTCCAAAAAAGCCACCGAACTGAGC
A_45_P07208927 FALSE chr9:35231952-35231996 chr9 NC_005108.2 35231952 35231996 rn|q21 GCTTCCCACTGCGGTCCCGATTCCTGAAAGTGACTGCGCGGGTTT
A_45_P10456706 FALSE chr16:5349257-5349301 chr16 NC_005115.2 5349257 5349301 rn|p16 GTGCGAATGACTCGAGCCGGGGAGGATAGAAGCTCCAACAGGCGC
A_45_P05118806 FALSE chr6:28226730-28226780 chr6 NC_005105.2 28226730 28226780 rn|q14 CAAGTTCATTAAGGGTCTTGCCTTAAGTAGCTAGGCAATTGGAACTCCCTG
A_45_P10518594 FALSE chr16:17444832-17444882 chr16 NC_005115.2 17444832 17444882 rn|p14 AAGAACAGGTATCTCAGAGACTTCCTGACAGGACACCCAAACACTGAAATT
A_45_P05735903 FALSE chr7:10129272-10129316 chr7 NC_005106.2 10129272 10129316 rn|q11 CACGTCATCCTGAGGTTGCCTTGCCAATGGTGAGATTTTGCGCAT
A_45_P11609077 FALSE chr18:56478451-56478505 chr18 NC_005117.2 56478451 56478505 rn|q12.1 CATCATTCAGCTGGGTTTGCGATTTCATTTGCTTGTGAATAGTCACTTGGAAAAG
A_45_P08069776 FALSE chr10:85780017-85780061 chr10 NC_005109.2 85780017 85780061 rn|q31 CTGTGGAATATCCTCCGCAACAATATCGGCAAAGACCTGTCCAAG

Total number of rows: 93121

Table truncated, full table size 13253 Kbytes.




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