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Platform GPL19391 Query DataSets for GPL19391
Status Public on Nov 05, 2015
Title Mycroarray Escherichia coli K12_substr_MG1655 3x20K Microarrays
Technology type in situ oligonucleotide
Distribution commercial
Organism Escherichia coli str. K-12 substr. MG1655
Manufacturer MYcroarray, MI. USA.
Manufacture protocol http://www.mycroarray.com/mycroarray/cat_arrays.php?org=bacteria_CE
Catalog number Item # CAT-3x15K-Escherichia_coli_str._K12_substr._MG1655-gene
 
 
Submission date Nov 06, 2014
Last update date Nov 05, 2015
Contact name Younghoon Kim
E-mail(s) ykeys2584@jbnu.ac.kr
Phone 82-10-4135-2584
Organization name Chonbuk National University
Department Department of Animal Science
Street address 567 Baekje-Daero, Deokjin-Gu
City Jeonju
ZIP/Postal code 561-756
Country South Korea
 
Samples (2) GSM1538989, GSM1538990
Series (1)
GSE63052 The involvement of body appearance in influencing the biofilm formation by Escherichia coli K-12 through RodZ

Data table header descriptions
ID
Gene Symbol
function
product
ORF Locus tag
tm
cross_hybrid
SEQUENCE nucleotide sequence of probe on microarray

Data table
ID Gene Symbol function product ORF tm cross_hybrid SEQUENCE
3734199 thrA 7.1 location of gene products; cytoplasm fused aspartokinase I and homoserine b0002 88.81 null ATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAA
3734202 thrB 7.1 location of gene products; cytoplasm homoserine kinase b0003 87.84 null ATGGTTAAAGTTTATGCCCCGGCTTCCAGTGCCAATATGAGCGTC
3734205 thrC 7.1 location of gene products; cytoplasm threonine synthase b0004 89.45 null CCATATTGCGGGTGATAAGCCAGTGACCATTCTGACCGCGACCTC
3734208 talB 7.1 location of gene products; cytoplasm transaldolase B b0008 85.12 null ATTCTTAACGCAGCGCAGATTCCGGAATACCGTAAGTTGATTGAT
3734211 yaaJ putative transport; Transport of small predicted transporter b0007 90.36 null CTGCTCTTCGGCGCAGGTTGTTGGTTCACTTTTCGCACCGGATTT
3734214 yaaX null predicted protein b0005 87.78 null AGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTC
3734217 yaaH null conserved inner membrane protein associated with b0010 90.11 null TGATGGGCTTCGGCATGACCACCATTCTGCTTAACCTGCACAACG
3734220 yaaA null conserved protein b0006 84.97 null ATGCTGATTCTTATTTCACCTGCGAAAACGCTTGATTACCAAAGCC
3734223 yaaW putative enzyme; Not classified conserved protein b0011 83.09 null GATTCAGATCTGGATTTTCTTCAGCATTGTAGTGAGGAACAGTTGG
3734226 mog "transport; Biosynthesis of cofactors, carriers:" predicted molybdochelatase b0009 84.54 null GAATACTTTACGTATTGGCTTAGTTTCCATCTCTGATCGCGCATCCA
3734229 yaaI null predicted protein b0013 85.13 null GCTGAAACTTCCTGTTTGTCGCATTGTGAAACGCATACAACTCTC
3734231 dnaJ factor; Chaperones "chaperone Hsp40, co-chaperone with DnaK" b0015 83.72 null GGCTAAGCAAGATTATTACGAGATTTTAGGCGTTTCCAAAACAGCG
3734234 dnaK 7.1 location of gene products; cytoplasm "chaperone Hsp70, co-chaperone with DnaJ" b0014 85.04 null GGTATCGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGAT
3734237 mokC 10 cryptic genes "regulatory protein for HokC, overlaps CDS of" b0018 86.2 "hokC|cell killing|toxic membrane protein, small|b4412 (-17.73, 77.28); hokD|component of addiction module (incomplete)|Qin prophage; small toxic polypeptide|b1562 (-14.45, 72.27)" AAGGTCAAGGAGAAGAGAGCAATGAAGCAGCATAAGGCGATGATTG
3734239 hokC cell killing "toxic membrane protein, small" b4412 90.44 "mokC|10 cryptic genes|regulatory protein for HokC, overlaps CDS of|b0018 (-304.48, 90.44); hokD|component of addiction module (incomplete)|Qin prophage; small toxic polypeptide|b1562 (-30.1, 85.47)" ATCCGAACTGGCCAGACGGAGGTTGCTGTTTTCACGGCTTACGAA
3734240 nhaA transport; Transport of small molecules: sodium-proton antiporter b0019 84.2 null TTTTCCTGTTAGTCGGTCTGGAAGTTAAACGTGAACTGATGCAAG
3734243 nhaR regulator; Transport of small molecules: DNA-binding transcriptional activator b0020 83.77 null CAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGG
3734246 insA 8.3 extrachromosomal; transposon related KpLE2 phage-like element; IS1 repressor protein b0022 87.08 "insA|8.3 extrachromosomal; transposon related|KpLE2 phage-like element; IS1 repressor protein|b0265 (-303.89, 87.08); insA|8.3 extrachromosomal; transposon related|KpLE2 phage-like element; IS1 repressor protein|b0275 (-303.89, 87.08); insA|8.3 extrachromosomal; transposon related|KpLE2 phage-like element; IS1 repressor protein|b4516 (-303.89, 87.08); insA|8.3 extrachromosomal; transposon related|KpLE2 phage-like element; IS1 repressor protein|b0022 (-303.89, 87.08); insA|8.3 extrachromosomal; transposon related|KpLE2 phage-like element; IS1 repressor protein|b1894 (-303.89, 87.08); insA|8.3 extrachromosomal; transposon related|KpLE2 phage-like element; IS1 repressor protein|b3444 (-303.89, 87.08); insA|8.3 extrachromosomal; transposon related|KpLE2 phage-like element; IS1 repressor protein|b4294 (-27.48, 82.74)" CCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACC
3734249 insL 8.3 extrachromosomal; transposon related IS186/IS421 transposase b0016 84.57 "insL|8.3 extrachromosomal; transposon related|IS186/IS421 transposase|b0016 (-303.52, 84.57); insL|8.3 extrachromosomal; transposon related|IS186/IS421 transposase|b0582 (-303.52, 84.57); insL|8.3 extrachromosomal; transposon related|IS186/IS421 transposase|b2394 (-303.52, 84.57)" TGAATGGCGACTACATATGGGATATGATCCTCATACCTGTCAGTTCA
3734251 insB 8.3 extrachromosomal; transposon related IS1 transposase InsAB' b0021 88.7 "insB|8.3 extrachromosomal; transposon related|IS1 transposase InsAB'|b0988 (-306.82, 88.7); insB|8.3 extrachromosomal; transposon related|IS1 transposase InsAB'|b0021 (-306.82, 88.7); insB|8.3 extrachromosomal; transposon related|IS1 transposase InsAB'|b1893 (-306.82, 88.7); insB|8.3 extrachromosomal; transposon related|IS1 transposase InsAB'|b3445 (-306.82, 88.7); insB|8.3 extrachromosomal; transposon related|IS1 transposase InsAB'|b0264 (-33.88, 86.52); insB|8.3 extrachromosomal; transposon related|IS1 transposase InsAB'|b0274 (-33.88, 86.52); insB|null|null|b4576 (-25.19, 79.66)" CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAA

Total number of rows: 4250

Table truncated, full table size 616 Kbytes.




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