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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 05, 2014 |
| Title |
Nimblegen Homo sapiens HG18 2.1M CNV Array [090518_HG18_CNV_v1_HX1] |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
see manufacturer's website
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| Submission date |
Dec 05, 2014 |
| Last update date |
Dec 05, 2014 |
| Organization |
NimbleGen Systems, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov
|
| Phone |
608-218-7600
|
| URL |
http://www.nimblegen.com/
|
| Street address |
504 S. Rosa Road
|
| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53719 |
| Country |
USA |
| |
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| Samples (308)
|
GSM1569234, GSM1569235, GSM1569236, GSM1569237, GSM1569238, GSM1569239
GSM1569240, GSM1569241, GSM1569242, GSM1569243, GSM1569244, GSM1569245, GSM1569246, GSM1569247, GSM1569248, GSM1569249, GSM1569250, GSM1569251, GSM1569252, GSM1569253, GSM1569254, GSM1569255, GSM1569256, GSM1569257, GSM1569258, GSM1569259, GSM1569260, GSM1569261, GSM1569262, GSM1569263, GSM1569264, GSM1569265, GSM1569266, GSM1569267, GSM1569268, GSM1569269, GSM1569270, GSM1569271, GSM1569272, GSM1569273, GSM1569274, GSM1569275, GSM1569276, GSM1569277, GSM1569278, GSM1569279, GSM1569280, GSM1569281, GSM1569282, GSM1569283, GSM1569284, GSM1569285, GSM1569286, GSM1569287, GSM1569288, GSM1569289, GSM1569290, GSM1569291, GSM1569292, GSM1569293, GSM1569294, GSM1569295, GSM1569296, GSM1569297, GSM1569298, GSM1569299, GSM1569300, GSM1569301, GSM1569302, GSM1569303, GSM1569304, GSM1569305, GSM1569306, GSM1569307, GSM1569308, GSM1569309, GSM1569310, GSM1569311, GSM1569312, GSM1569313, GSM1569314, GSM1569315, GSM1569316, GSM1569317, GSM1569318, GSM1569319, GSM1569320, GSM1569321, GSM1569322, GSM1569323, GSM1569324, GSM1569325, GSM1569326, GSM1569327, GSM1569328, GSM1569329, GSM1569330, GSM1569331, GSM1569332, GSM1569333, GSM1569334, GSM1569335, GSM1569336, GSM1569337, GSM1569338, GSM1569339, GSM1569340, GSM1569341, GSM1569342, GSM1569343, GSM1569344, GSM1569345, GSM1569346, GSM1569347, GSM1569348, GSM1569349, GSM1569350, GSM1569351, GSM1569352, GSM1569353, GSM1569354, GSM1569355, GSM1569356, GSM1569357, GSM1569358, GSM1569359, GSM1569360, GSM1569361, GSM1569362, GSM1569363, GSM1569364, GSM1569365, GSM1569366, GSM1569367, GSM1569368, GSM1569369, GSM1569370, GSM1569371, GSM1569372, GSM1569373, GSM1569374, GSM1569375, GSM1569376, GSM1569377, GSM1569378, GSM1569379, GSM1569380, GSM1569381, GSM1569382, GSM1569383, GSM1569384, GSM1569385, GSM1569386, GSM1569387, GSM1569388, GSM1569389, GSM1569390, GSM1569391, GSM1569392, GSM1569393, GSM1569394, GSM1569395, GSM1569396, GSM1569397, GSM1569398, GSM1569399, GSM1569400, GSM1569401, GSM1569402, GSM1569403, GSM1569404, GSM1569405, GSM1569406, GSM1569407, GSM1569408, GSM1569409, GSM1569410, GSM1569411, GSM1569412, GSM1569413, GSM1569414, GSM1569415, GSM1569416, GSM1569417, GSM1569418, GSM1569419, GSM1569420, GSM1569421, GSM1569422, GSM1569423, GSM1569424, GSM1569425, GSM1569426, GSM1569427, GSM1569428, GSM1569429, GSM1569430, GSM1569431, GSM1569432, GSM1569433, GSM1569434, GSM1569435, GSM1569436, GSM1569437, GSM1569438, GSM1569439, GSM1569440, GSM1569441, GSM1569442, GSM1569443, GSM1569444, GSM1569445, GSM1569446, GSM1569447, GSM1569448, GSM1569449, GSM1569450, GSM1569451, GSM1569452, GSM1569453, GSM1569454, GSM1569455, GSM1569456, GSM1569457, GSM1569458, GSM1569459, GSM1569460, GSM1569461, GSM1569462, GSM1569463, GSM1569464, GSM1569465, GSM1569466, GSM1569467, GSM1569468, GSM1569469, GSM1569470, GSM1569471, GSM1569472, GSM1569473, GSM1569474, GSM1569475, GSM1569476, GSM1569477, GSM1569478, GSM1569479, GSM1569480, GSM1569481, GSM1569482, GSM1569483, GSM1569484, GSM1569485, GSM1569486, GSM1569487, GSM1569488, GSM1569489, GSM1569490, GSM1569491, GSM1569492, GSM1569493, GSM1569494, GSM1569495, GSM1569496, GSM1569497, GSM1569498, GSM1569499, GSM1569500, GSM1569501, GSM1569502, GSM1569503, GSM1569504, GSM1569505, GSM1569506, GSM1569507, GSM1569508, GSM1569509, GSM1569510, GSM1569511, GSM1569512, GSM1569513, GSM1569514, GSM1569515, GSM1569516, GSM1569517, GSM1569518, GSM1569519, GSM1569520, GSM1569521, GSM1569522, GSM1569523, GSM1569524, GSM1569525, GSM1569526, GSM1569527, GSM1569528, GSM1569529, GSM1569530, GSM1569531, GSM1569532, GSM1569533, GSM1569534, GSM1569535, GSM1569536, GSM1569537, GSM1569538, GSM1569539, GSM1569540, GSM1569541
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| Series (1) |
| GSE64088 |
Exome sequencing and genome-wide copy number variant mapping reveal novel associations with sensorineural hereditary hearing loss |
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| Data table header descriptions |
| ID |
PROBE_ID from .pos file |
| SEQ_ID |
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| CHROMOSOME |
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| RANGE_GB |
|
| RANGE_START |
POSITION; the start position of the probe (relative to the RANGE_GB accession) |
| RANGE_END |
The end position of the probe (relative to the RANGE_GB accession) |
| SEQUENCE |
probe sequence |
| Data table |
| ID |
SEQ_ID |
CHROMOSOME |
RANGE_GB |
RANGE_START |
RANGE_END |
SEQUENCE |
| CHR01FS000017636 |
chr1:499-81454 |
chr1 |
NC_000001.9 |
17636 |
17695 |
TGCTACAGTATGACTGCTAATAATACCTACACATGTTAGAACCATTCTGACTCCTCAAGA |
| CHR01FS000031927 |
chr1:17845-167209 |
chr1 |
NC_000001.9 |
31927 |
31986 |
GAGGGTAAACAATGTGCCATTACGTTGCCAATTGAATGCCTCAATCATGTCAAGGGCTGA |
| CHR01FS000032027 |
chr1:499-81454 |
chr1 |
NC_000001.9 |
32027 |
32086 |
GGCTGTAGCTAGAACTGCCTTAATGATAAGAGATCATGCTGAATTACCCATGCAAAACCT |
| CHR01FS000032108 |
chr1:1-247249719 |
chr1 |
NC_000001.9 |
32108 |
32167 |
ACTTTATTCAAGAGCCTATTGTGCAAGCATAAGTGGCTGAGTCAGGTTCTCAACTCTGCT |
| CHR01FS000036566 |
chr1:1-247249719 |
chr1 |
NC_000001.9 |
36566 |
36625 |
GCAATCATGTAGACATCCTGATTCCAGACAATGTGTCTGGAGGCAGGGTTTACAGGACTT |
| CHR01FS000037196 |
chr1:1-247249719 |
chr1 |
NC_000001.9 |
37196 |
37255 |
TGAATGGGAAGAAATCAAGAATAGTTATACGAATATCACCATTGCATTAAAGCTCTCTTC |
| CHR01FS000037304 |
chr1:499-81454 |
chr1 |
NC_000001.9 |
37304 |
37363 |
ACACCATGAATGAGGGCATCTTCAACAATGGTGGATGACGTCTTAGTTTCCCTCAACTCA |
| CHR01FS000037530 |
chr1:17845-167209 |
chr1 |
NC_000001.9 |
37530 |
37589 |
GAGGCCTGGTTACAAGGATCTAAGAAGCATCAATGGGTCACTAACATCTAGTGGTACTAA |
| CHR01FS000038109 |
chr1:1-247249719 |
chr1 |
NC_000001.9 |
38109 |
38168 |
CATTCCCTCTGTATGCCATATTTGATAAAGCATTTGATAATCTTAGTCAATGCCTGGGCC |
| CHR01FS000039532 |
chr1:1-247249719 |
chr1 |
NC_000001.9 |
39532 |
39591 |
TGAAGTCAGGAGACACACATTCTATCTGATTTTCTACATTATCTGTTTGAAAAGGTTACC |
| CHR01FS000039867 |
chr1:17845-167209 |
chr1 |
NC_000001.9 |
39867 |
39926 |
CAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCACTACA |
| CHR01FS000041830 |
chr1:499-81454 |
chr1 |
NC_000001.9 |
41830 |
41889 |
TACGTGGACGACGTTGTGTTGAACATGGGTGAGTAAGACTGAAGCAGCCGTAATTACTGC |
| CHR01FS000042876 |
chr1:17845-167209 |
chr1 |
NC_000001.9 |
42876 |
42935 |
TACAAACTAGAGGTTGTAGTCACTGCTAACAGTGGGCTTATATCCATAGCTACCTGTTTC |
| CHR01FS000043737 |
chr1:1-247249719 |
chr1 |
NC_000001.9 |
43737 |
43796 |
GCTTTGTCAGTTTACGATGCTATTTCAGTTTTGTGCTCAGATTTGAGTGATTGCAGGAAG |
| CHR01FS000045589 |
chr1:1-247249719 |
chr1 |
NC_000001.9 |
45589 |
45648 |
CTCTTTTGTAAGACTAACAGCCCTCAAAATTTTTCATTCAGTGATGTCTTCCTCATTGCA |
| CHR01FS000046570 |
chr1:45227-76136 |
chr1 |
NC_000001.9 |
46570 |
46629 |
GCTCTAAACAAATGCCACTGTAAACCAAGGTGGAGCCTTTGCACTTTCAGGCCACCATGA |
| CHR01FS000047089 |
chr1:1-247249719 |
chr1 |
NC_000001.9 |
47089 |
47148 |
GGTGCCATAAGTGAAGGTATCTCTGTCCACCCTGAATATATTTTCACTCCCTCATCTCAG |
| CHR01FS000047954 |
chr1:17845-167209 |
chr1 |
NC_000001.9 |
47954 |
48013 |
TCTCTTTTGGTATTACCTTCCTCCACATTGGAACACTCCAGCCAATGCATAGGCTGAGAG |
| CHR01FS000048466 |
chr1:1-247249719 |
chr1 |
NC_000001.9 |
48466 |
48525 |
TCTGAACATCCTTTTTGTTTAATATAAGTCTGCATTTCCTGTTTGAAGATATGTGTCCCA |
| CHR01FS000049283 |
chr1:1-247249719 |
chr1 |
NC_000001.9 |
49283 |
49342 |
TCCATGTTTGCAGTGACAATATACATAAACAGTGTATGAAAACTCAAGTAAAATCTACTC |
Total number of rows: 2159817
Table truncated, full table size 279023 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL19515_090518_HG18_CNV_v1_HX1.ncd.gz |
260 b |
(ftp)(http) |
NCD |
| GPL19515_090518_HG18_CNV_v1_HX1.ndf.gz |
128.6 Mb |
(ftp)(http) |
NDF |
| GPL19515_090518_HG18_CNV_v1_HX1.pos.gz |
17.1 Mb |
(ftp)(http) |
POS |
| GPL19515_090518_HG18_CNV_v1_HX1_CNV_annotation.gff.gz |
558.9 Kb |
(ftp)(http) |
GFF |
| GPL19515_090518_HG18_CNV_v1_HX1_probe_locations.gff.gz |
16.8 Mb |
(ftp)(http) |
GFF |
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