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Platform GPL19566 Query DataSets for GPL19566
Status Public on Dec 18, 2014
Title [RCnGene-1_0-st] Affymetrix Rice (Chinese Build) Gene 1.0 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Oryza sativa
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

#%chip_type=RCnGene-1_0-st-v1
#%lib_set_name=RCnGene-1_0-st
#%lib_set_version=v1
#%genome-version=bgi102808
#%genome-version-ucsc=bgi102808
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-version-ucsc=bgi102808
#%netaffx-annotation-date=2014-02-11
#%netaffx-annotation-netaffx-build=34
#%netaffx-annotation-data-type=transcript_cluster
 
Submission date Dec 18, 2014
Last update date Dec 18, 2014
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (18) GSM1568539, GSM1568540, GSM1568541, GSM1568542, GSM1568543, GSM1568544 
Series (3)
GSE64321 Differential expression of Rice genes upon Rhodotorula treatment
GSE99055 Global gene expression in Abp57-overexpressing transgenic rice
GSE99075 Differential expression of rice root genes upon Rhodotorula treatment

Data table header descriptions
ID transcript cluster id
probeset_id
seqname
strand
start
stop
total_probes
gene_assignment
crosshyb_type
category
SPOT_ID

Data table
ID probeset_id seqname strand start stop total_probes gene_assignment crosshyb_type category SPOT_ID
16380000 16380000 g109156581-1 + 1 1062 25 NM_001058831 // Os04g0236400 // Os04g0236400 // --- // 4335241 1 chloroplast g109156581-1
16380004 16380004 g109156581-11 + 1 711 15 --- 1 chloroplast g109156581-11
16380006 16380006 g109156581-12 + 1 744 25 AK121120 // atpI // ATPase IV subunit // --- // 3131393 /// AK121120 // Os10g0527100 // Os10g0527100 // --- // 4349180 /// AK242773 // atpI // ATPase IV subunit // --- // 3131393 /// AK242773 // Os10g0527100 // Os10g0527100 // --- // 4349180 /// NM_001071652 // Os10g0527100 // Os10g0527100 // --- // 4349180 1 chloroplast g109156581-12
16380008 16380008 g109156581-13 + 1 246 26 AK121120 // atpI // ATPase IV subunit // --- // 3131393 /// AK121120 // Os10g0527100 // Os10g0527100 // --- // 4349180 /// AK242773 // atpI // ATPase IV subunit // --- // 3131393 /// AK242773 // Os10g0527100 // Os10g0527100 // --- // 4349180 /// NM_001071652 // Os10g0527100 // Os10g0527100 // --- // 4349180 /// NM_001189173 // Os10g0355100 // Os10g0355100 // --- // 9271958 3 chloroplast g109156581-13
16380010 16380010 g109156581-14 + 1 1524 25 --- 1 chloroplast g109156581-14
16380012 16380012 g109156581-15 + 1 312 27 --- 3 chloroplast g109156581-15
16380014 16380014 g109156581-16 + 1 2205 25 --- 1 chloroplast g109156581-16
16380016 16380016 g109156581-17 + 1 2253 25 --- 1 chloroplast g109156581-17
16380018 16380018 g109156581-18 + 1 606 25 --- 1 chloroplast g109156581-18
16380020 16380020 g109156581-19 + 1 480 28 --- 1 chloroplast g109156581-19
16380022 16380022 g109156581-2 + 1 1536 25 --- 1 chloroplast g109156581-2
16380024 16380024 g109156581-20 + 1 678 20 --- 1 chloroplast g109156581-20
16380026 16380026 g109156581-21 + 1 363 27 AK242843 // Os01g0749400 // Os01g0749400 // --- // 4324621 /// AK243355 // Os10g0526301 // Os10g0526301 // --- // 9268467 /// NM_001189317 // Os10g0526301 // Os10g0526301 // --- // 9268467 3 chloroplast g109156581-21
16380028 16380028 g109156581-22 + 1 414 28 --- 1 chloroplast g109156581-22
16380030 16380030 g109156581-23 + 1 1455 29 --- 3 chloroplast g109156581-23
16380032 16380032 g109156581-24 + 1 321 27 --- 1 chloroplast g109156581-24
16380034 16380034 g109156581-25 + 1 558 8 AK062797 // Os01g0792400 // Os01g0792400 // --- // 4324122 /// NM_001051030 // Os01g0792400 // Os01g0792400 // --- // 4324122 1 chloroplast g109156581-25
16380036 16380036 g109156581-26 + 1 963 25 --- 1 chloroplast g109156581-26
16380038 16380038 g109156581-27 + 1 120 25 AK059143 // Os01g0881700 // Os01g0881700 // --- // 4324991 1 chloroplast g109156581-27
16380040 16380040 g109156581-28 + 1 252 26 --- 1 chloroplast g109156581-28

Total number of rows: 41770

Table truncated, full table size 5784 Kbytes.




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Supplementary data files not provided
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