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Platform GPL19705 Query DataSets for GPL19705
Status Public on Jan 29, 2015
Title Agilent-041162 Chr6q_10q_14q
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16041162 or 2541162.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jan 26, 2015
Last update date Jan 29, 2015
Contact name James Lupski
E-mail(s) jluspki@bcm.tmc.edu
Organization name Baylor College of Medicine
Street address One Baylor Plaza, 604B
City Houston
ZIP/Postal code 77030
Country USA
 
Samples (9) GSM1594091, GSM1594092, GSM1594093, GSM1594094, GSM1594095, GSM1594096 
Series (2)
GSE65375 Absence of heterozygosity due to template switching during replicative rearrangements [Agilent-041162 Chr6q_10q_14q]
GSE65379 Absence of heterozygosity due to template switching during replicative rearrangements

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
SEQUENCE

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION SEQUENCE
1 528 796 HsCGHBrightCorner pos
2 528 794 DarkCorner pos
3 528 792 DarkCorner pos
4 528 790 A_16_P59491251 FALSE NM_004562 PARK2 "parkinson protein 2, E3 ubiquitin protein ligase (parkin)" ref|NM_004562|ref|NM_013987|ref|NM_013988 chr6:162203098-162203157 hs|q26 "Homo sapiens parkinson protein 2, E3 ubiquitin protein ligase (parkin) (PARK2), transcript variant 1, mRNA." CAGATCCCAGTAATACTCTGACAACAATATGAAAATACGGGTGCACACAAGTCTATTAGT
5 528 788 A_16_P37716450 FALSE NM_014165 NDUFAF4 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4" ref|NM_014165 chr6:97344334-97344393 hs|q16.1 "Homo sapiens NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4 (NDUFAF4), nuclear gene encoding mitochondrial protein, mRNA." ATGCCTTACCAAATCCTACAAATTCTGAAATACTATGAAATAATTCACACAGTTGCTTGT
6 528 786 A_16_P18988501 FALSE ens|ENST00000429250|ens|ENST00000432742 chr10:80099405-80099464 hs|q22.3 TCAGTGAAGGAGTGAATATTGAATCTAGATTGGTGAACTTCCAAACAAAGACCACTTTTA
7 528 784 A_16_P03067908 FALSE NM_001145648 RASGRF1 Ras protein-specific guanine nucleotide-releasing factor 1 ref|NM_001145648|ref|NM_002891 chr15:79321450-79321509 hs|q25.1 "Homo sapiens Ras protein-specific guanine nucleotide-releasing factor 1 (RASGRF1), transcript variant 3, mRNA." GTTGAGGACATGCATTTTAGGCTTAAATTCACTAGACTAGCCCTTTAATAAATGGACCAG
8 528 782 A_16_P37758386 FALSE ens|ENST00000519104|ens|ENST00000523087|ens|ENST00000519270 chr6:114343906-114343965 hs|q21 TCCCCCATACTTATGAAAATAATTACAGCACTCGATTTTAGAATAATTTTTCCTAGACCT
9 528 780 A_16_P01614009 FALSE chr6:150908885-150908944 hs|q25.1 CTTGAGGAATACTACTTATTGGTAGATTGGGCTAACTGAAAGGTTTGGGTGGAATAAAAA
10 528 778 A_16_P59404190 FALSE chr6:104357176-104357230 hs|q16.3 CCATCACAGGAAGTTAAAAACGGATACTGTTATTGCTCCCCTCACCTGATTTTTT
11 528 776 A_16_P01577629 FALSE NM_001199619 NCOA7 nuclear receptor coactivator 7 ref|NM_001199619|ref|NM_001199620|ref|NM_001122842|ref|NM_001199621|ref|NM_181782 chr6:126239325-126239380 hs|q22.32 "Homo sapiens nuclear receptor coactivator 7 (NCOA7), transcript variant 3, mRNA." ATCACATGGAATGGCACCCATTTATTTAGAATTGTTTCTCTACTGTCTCCTCACCT
12 528 774 A_18_P25012299 FALSE BC040697 gb|BC040697 chr6:85435498-85435557 hs|q14.3 "Homo sapiens T-box 18, mRNA (cDNA clone IMAGE:6023106), partial cds." ATGCATTTAATTTAATAGAGGTAAGGCAAGAGAAAGAATCACATTCACCAGCAAACGATT
13 528 772 A_16_P57176939 FALSE NM_001001872 C14orf37 chromosome 14 open reading frame 37 ref|NM_001001872 chr14:58519045-58519104 hs|q23.1 "Homo sapiens chromosome 14 open reading frame 37 (C14orf37), mRNA." TATCTTACACACATCTCACACAGTTCTCAAAAGAACTCTGCTGCTATCCCATTTTACAAT
14 528 770 A_16_P02374001 FALSE chr10:132358607-132358655 hs|q26.3 CTTCACAGCGAGCGCTTTATAGGCTCAGTAAGTGGGTTTCGACATGTAT
15 528 768 A_18_P11990088 FALSE NM_182830 MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 ref|NM_182830|ref|NM_001113498 chr14:47356943-47357002 hs|q21.3 "Homo sapiens MAM domain containing glycosylphosphatidylinositol anchor 2 (MDGA2), transcript variant 2, mRNA." TGACACTTTTACTGTCTCTTAATTTTAGATTTATATATATATGAACAATAGGCAAAGTGC
16 528 766 A_16_P56526361 FALSE NM_207303 ATRNL1 attractin-like 1 ref|NM_207303 chr10:117284339-117284398 hs|q25.3 "Homo sapiens attractin-like 1 (ATRNL1), mRNA." CCAACTCTAATAAGAGGACATGATGATATTTTGAATGCTTGGCTATCTGTGTCTAATGGG
17 528 764 A_16_P20005000 FALSE ens|ENST00000487915|ens|ENST00000464521 chr14:34603740-34603797 hs|q13.1 TAATCAGAAACTTTTCCAGGACTTGAATGTAGAGTGACCCAACATCATGAAGGCAATT
18 528 762 A_16_P40295228 FALSE chr14:95993336-95993395 hs|q32.13 ACATGAAGTATGTAACAGAGTTAGAATAACTTTATCTGGCACAATGGAGTAAAGTATTCC
19 528 760 A_18_P10720213 FALSE chr10:48634526-48634576 hs|q11.22 CTGTCTGCAAGTTCCTCAAGTTTCCCTAACTTAACTTTGCTAGGAGGAAGG
20 528 758 A_16_P17680726 FALSE chr6:113456105-113456164 hs|q21 ATGAACTCATGAGTCTGTTATGACAGGACATCAGATCTAACCAAATTCTTGCCACTTTAT

Total number of rows: 420288

Table truncated, full table size 84441 Kbytes.




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