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Platform GPL19764 Query DataSets for GPL19764
Status Public on Dec 31, 2016
Title Agilent-041913 Nicotiana attenuata 60K [Probe Name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Nicotiana attenuata
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description N. attenuata transcriptome microarray. The probe design for this microarray was done based on whole transcriptome data.
 
Submission date Feb 10, 2015
Last update date Dec 31, 2016
Contact name Klaus Gase
Organization name Max-Planck-Institute for Chemical Ecology
Department Molecular Ecology
Street address Hans-Knoell-Strasse 8
City Jena
ZIP/Postal code 07745
Country Germany
 
Samples (24) GSM3244791, GSM3244792, GSM3244793, GSM3244794, GSM3244795, GSM3244796 
Series (2)
GSE116648 ZEITLUPE regulates auxin signaling and the temporal gating of auxin responses that allow flowers to move
GSE117235 The circadian movement of flowers in the wild tobacco reveals a role for ZEITLUPE in the temporal gating of auxin responses

Data table header descriptions
ID Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
Acc
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ Acc CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
Na_60k_1_00004 NA43944_37581|F6I390_VITVI|1-15... FALSE Na_454_37701 XM_009601216 unmapped "PREDICTED: Nicotiana tomentosiformis pectinesterase 2-like (LOC104095164), mRNA" GGGTGAATTGGCCTGGTTATCGAGTTATTAACAGTGCAGCTGAGGCATCTAAGTTTACTC
Na_60k_1_00005 NA66232_12307|PGSCDMP400025753|... FALSE Na_GEN_2013_05_15_scaffold14888 HG975520 unmapped "Solanum lycopersicum chromosome ch08, complete genome" CCAACTCATGAGATGGAATTGAAGGACCTTAAAAACAGGCAGAGCCAAAATGTTAGAGAT
Na_60k_1_00006 scaffold36283 FALSE Na_454_04977 XM_009779031 unmapped "PREDICTED: Nicotiana sylvestris 3-ketoacyl-CoA synthase 10 (LOC104226928), mRNA" CCTTCAACAAATCCTTGGATTGATTGCGTTGATATGTACCCTCAGTCTCTCACACAGTAA
Na_60k_1_00007 scaffold45089 FALSE Na_454_20965 XR_684642 unmapped "PREDICTED: Nicotiana tomentosiformis uncharacterized LOC104088773 (LOC104088773), ncRNA" TTTTCCGTACTCACGCTACACTTCTGCACTGATGTGAAGGTATTGAGACAAGTTCCACCA
Na_60k_1_00008 NA18784_1984|PGSCDMP400028810|3... FALSE Na_TC_2012_06_14_scaffold9229_Locus_7215_0_12.9_COMPLEX XM_009800159 unmapped "PREDICTED: Nicotiana sylvestris probable F-box protein At4g22030 (LOC104244688), mRNA" CTTGCTAATGCTTCTTCTTGGAAAGGAGAACAACTAGATGAATCTGCAAGCAAGCTTTTT
Na_60k_1_00009 NA14387_48230|C4J8L8_MAIZE|3525... FALSE Na_GEN_2013_05_15_scaffold2520 XM_009770627 unmapped "PREDICTED: Nicotiana sylvestris uncharacterized LOC104219876 (LOC104219876), mRNA" GGATTTTCAGATGTCTCTCTTCTTCTTTTTCTTTCTTTGGAGGCGTCTCTGAGACCTACA
Na_60k_1_00010 C693108 FALSE Na_TC_2012_06_14_C693108_52.0 XM_009770667 unmapped "PREDICTED: Nicotiana sylvestris uncharacterized LOC104219898 (LOC104219898), mRNA" TTGCCTAGCTCATTGGATAGGCTTTTGAAGTTTGCTCCTAAGGTCATGATGTTCGGTTGA
Na_60k_1_00011 scaffold50123 FALSE Na_454_72007 XM_009787999 unmapped "PREDICTED: Nicotiana sylvestris ribosomal N-lysine methyltransferase 3 (LOC104234436), transcript variant X2, mRNA" ATCCCAGCATTTATCTTAGTTGTTTTGGTCGGTACAGTAGCTTGCTTAATAGGTATGTAG
Na_60k_1_00012 scaffold42954 FALSE Na_TC_2012_06_14_scaffold42954_Locus_54487_0_59.7_FORK XM_009761274 unmapped "PREDICTED: Nicotiana sylvestris anaphase-promoting complex subunit 2 (LOC104212090), mRNA" AGGTCAAGAGATAAAGCAGCCAAGAGAAGATGTTGACATCTGGCGCTCGTTAGATTTTTT
Na_60k_1_00013 NA3423_34755|G7KS36_MEDTR|1-621... FALSE Na_GEN_2013_05_15_scaffold1446 XM_009792932 unmapped "PREDICTED: Nicotiana sylvestris kinesin-related protein 4-like (LOC104238546), mRNA" TGGGAGAGTAAAGTTGATGTTATCACTGAAGCTAAGGATCTACAAAAGCTGACCATTGAT
Na_60k_1_00014 scaffold47766 FALSE Na_454_03778 XM_009760564 unmapped "PREDICTED: Nicotiana sylvestris inactive rhomboid protein 1-like (LOC104211501), mRNA" TTGATTAGCCATCACTTACAATTCGTTTGTAAATTGATGCCATTTCCATTGCGGCCATAG
Na_60k_1_00015 scaffold22505 FALSE Na_454_10173 XM_009800920 unmapped "PREDICTED: Nicotiana sylvestris GATA transcription factor 24-like (LOC104245328), mRNA" ATGCATGTGGACTTACGTGGGCCAATAAGGGGATTTTAAGAGATCTTTCTAAAGTTTCGA
Na_60k_1_00016 scaffold7886 FALSE Na_TC_2012_06_14_scaffold7886_Locus_6093_0_46.5_COMPLEX no hits unmapped no hits TAAGTTTTTGTTTTCGAAGTGTTGGACTATTCATATTTTGTGGGGCGCAGCGCGGGAGGT
Na_60k_1_00017 NA40403_34988|G7ZWK8_MEDTR|1703... FALSE Na_GEN_2013_05_15_scaffold7616 XR_687207 unmapped "PREDICTED: Nicotiana tomentosiformis uncharacterized LOC104100249 (LOC104100249), transcript variant X3, ncRNA" ACCAACTTAGTAATTTTTATTGTCCGAAGTCAGTTGACCGTATCCGGGACGTATCCCGTC
Na_60k_1_00018 NA7259_39390|A5BAE2_VITVI|1-479... FALSE Na_GEN_2013_05_15_scaffold3100 no hits unmapped no hits CCAAGAGGATTTCTGCGGTAAAGTTCCAAGTAAAACCTAGGGTTTTAATAAAAACAAGAT
Na_60k_1_00019 NA2776_49487|C5Y718_SORBI|1-664... FALSE Na_GEN_2013_05_15_scaffold2875 XM_009803427 unmapped "PREDICTED: Nicotiana sylvestris pleiotropic drug resistance protein 1-like (LOC104247414), mRNA" GAGCTCAAATATGTGAAGTCTCATGATCAAGTTGCAGACATTTTTACAAAGCCTCTCAAG
Na_60k_1_00020 scaffold34886 FALSE Na_TC_2012_06_14_scaffold34886_Locus_39012_3_31.2_LINEAR no hits unmapped no hits TGTGCATTTATAAAACTTGATTTAACTAGGGATACCACAGTACCAATCATTTCAGTGCCA
Na_60k_1_00021 scaffold19156 FALSE Na_TC_2012_06_14_scaffold19160_Locus_17416_4_52.9_COMPLEX no hits unmapped no hits TTTTCATGCTTAGCAGAGAGCGTTAAAAAGGCCTTCTCCCTCAGATATTGTATTGTTTAA
Na_60k_1_00022 scaffold18985 FALSE Na_TC_2012_06_14_scaffold18985_Locus_17207_0_57.7_COMPLEX HG975517 unmapped "Solanum lycopersicum chromosome ch05, complete genome" GCATATAACCAAGGTGTCAGAGAAGGTTGTTCTTGGCATTACCTCCTTTCTTATTGAGCC
Na_60k_1_00023 scaffold49054 FALSE Na_TC_2012_06_14_scaffold49054_Locus_70037_0_56.2_BUBBLE XM_009589165 unmapped "PREDICTED: Nicotiana tomentosiformis DNA repair helicase XPB1-like (LOC104085185), mRNA" CAAGGATTTGTCCAAGAGACACTTCTTATTCAAAAAACGCTATGTTTGAATAGGGATTGT

Total number of rows: 59157

Table truncated, full table size 12973 Kbytes.




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Supplementary file Size Download File type/resource
GPL19764_041913_D_GEO_20120703.txt.gz 2.3 Mb (ftp)(http) TXT

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