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Platform GPL19852 Query DataSets for GPL19852
Status Public on Jun 18, 2015
Title Agilent-025521 Drosophila melanogaster Amp and UR 4X180
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila melanogaster
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Amp and UR regions

Arrays of this design have barcodes that begin with 16025521 or 2525521.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Mar 04, 2015
Last update date Jun 18, 2015
Contact name Terry L. Orr-Weaver
E-mail(s) weaver@wi.mit.edu
Phone 617-258-5251
Organization name Whitehead Institute for Biomedical Research
Lab Orr-Weaver
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Samples (2) GSM1629143, GSM2290661
Series (3)
GSE66690 CGH of stage 13 amplifying follicle cells to measure changes in replication fork progression in DNA damage checkpoint and double-strand break repair mutants
GSE66691 Replication fork progression during re-replication requires the DNA damage checkpoint and double-strand break repair
GSE86012 CGH of Drosophila Follicle Cell Amplicons in double-strand break repair mutants

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE

Data table
ID COL ROW SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE
1 532 340 DarkCorner2 pos
2 532 338 DarkCorner2 pos
3 532 336 DarkCorner2 pos
4 532 334 DarkCorner2 pos
5 532 332 DarkCorner2 pos
6 532 330 DarkCorner2 pos
7 532 328 DarkCorner2 pos
8 532 326 DarkCorner2 pos
9 532 324 DarkCorner2 pos
10 532 322 DarkCorner2 pos
11 532 320 DarkCorner2 pos
12 532 318 DarkCorner2 pos
13 532 316 DarkCorner2 pos
14 532 314 DarkCorner2 pos
15 532 312 DarkCorner2 pos
16 532 310 DarkCorner2 pos
17 532 308 DarkCorner2 pos
18 532 306 DarkCorner2 pos
19 532 304 DarkCorner2 pos
20 532 302 DarkCorner2 pos

Total number of rows: 180880

Table truncated, full table size 16986 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL19852_025521_D_GEO_20090925-1.txt.gz 1.7 Mb (ftp)(http) TXT
GPL19852_025521_D_SequenceList_20090925.txt.gz 3.8 Mb (ftp)(http) TXT

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