GEO help: Mouse over screen elements for information.
Status
Public on May 11, 2005
Title
Bead-based microRNA profiling platform version 2
Technology type
oligonucleotide beads
Distribution
non-commercial
Organism
Homo sapiens
Description
Capture oligonucleotides were crosslinked to uniquely-colored Luminex xMap beads, which serve as discriminators of probe identity
Web link
http://www.broad.mit.edu/cancer/pub/miGCM Contributor(s)
Lu J , Getz G , Miska EA , Alvarez-Saavedra EA , Lamb J , Peck D , Ebert BL , Mak RH , Sweet-Cordero A , Ferrando AA , Downing JR , Jacks T , Horvitz HR , Golub TR Submission date
Apr 25, 2005
Last update date
Jun 16, 2005
Contact name
Jun Lu
E-mail(s)
jun.lu@yale.edu Phone
203-737-3426
Organization name
Yale University
Department
Yale Stem Cell Center and Department of Genetics
Lab
Jun Lu
Street address
10 Amistad St
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Samples (79)
GSM49249 , GSM49250 , GSM49251 , GSM49252 , GSM49253 , GSM49254
GSM49255 ,
GSM49256 ,
GSM49257 ,
GSM49258 ,
GSM49259 ,
GSM49260 ,
GSM49261 ,
GSM49262 ,
GSM49263 ,
GSM49264 ,
GSM49265 ,
GSM49266 ,
GSM49267 ,
GSM49268 ,
GSM49269 ,
GSM49270 ,
GSM49271 ,
GSM49272 ,
GSM49273 ,
GSM49274 ,
GSM49275 ,
GSM49276 ,
GSM49277 ,
GSM49278 ,
GSM49279 ,
GSM49280 ,
GSM49281 ,
GSM49282 ,
GSM49283 ,
GSM49284 ,
GSM49285 ,
GSM49286 ,
GSM49287 ,
GSM49288 ,
GSM49289 ,
GSM49290 ,
GSM49291 ,
GSM49292 ,
GSM49293 ,
GSM49294 ,
GSM49295 ,
GSM49296 ,
GSM49297 ,
GSM49298 ,
GSM49299 ,
GSM49300 ,
GSM49301 ,
GSM49302 ,
GSM49303 ,
GSM49304 ,
GSM49305 ,
GSM49306 ,
GSM49307 ,
GSM49308 ,
GSM49309 ,
GSM49310 ,
GSM49311 ,
GSM49312 ,
GSM49313 ,
GSM49314 ,
GSM49315 ,
GSM49316 ,
GSM49317 ,
GSM49318 ,
GSM49319 ,
GSM49320 ,
GSM49321 ,
GSM49322 ,
GSM49323 ,
GSM49324 ,
GSM49325 ,
GSM49326 ,
GSM49327 Series (1)
Data table header descriptions ID PROBE_NAME Probe name
PROBE_SEQUENCE SEQUENCE TARGET_SEQ Target sequence
R_HUMAN Recongnized human microRNA in microRNA registry rfam 5.0 database
R_MOUSE Recongnized mouse microRNA in microRNA registry rfam 5.0 database
R_RAT Recongnized rat microRNA in microRNA registry rfam 5.0 database
R_OTHER Recongnizing other sequences
CTRL_TYPE If it is a control feature and what type of control
SET_ASSIGN Bead set assignment for this probe
USAGE Whether used or not in final data analysis
Data table ID PROBE_NAME PROBE_SEQUENCE SEQUENCE TARGET_SEQ R_HUMAN R_MOUSE R_RAT R_OTHER CTRL_TYPE SET_ASSIGN USAGE 1
EAM193
/5AmMC6/TGGCATTCACCGCGTGCCTTA
TGGCATTCACCGCGTGCCTTA
UUAAGGCACGCGGUGAAUGCCA
hsa-miR-124a
mmu-miR-124a
rno-miR-124a
NA
NA
1
Used
2
EAM190
/5AmMC6/TCACAAGTTAGGGTCTCAGGGA
TCACAAGTTAGGGTCTCAGGGA
UCCCUGAGACCCUAACUUGUGA
hsa-miR-125b
mmu-miR-125b
rno-miR-125b
NA
NA
1
Used
3
EAM187
/5AmMC6/AACAACAAAATCACTAGTCTTCCA
AACAACAAAATCACTAGTCTTCCA
UGGAAGACUAGUGAUUUUGUU
hsa-miR-7
mmu-miR-7
rno-miR-7
NA
NA
1
Used
4
EAM185
/5AmMC6/TAACTGTACAAACTACTACCTCA
TAACTGTACAAACTACTACCTCA
UGAGGUAGUAGUUUGUACAGU
hsa-let-7g
mmu-let-7g
NA
NA
NA
1
Used
5
EAM181
/5AmMC6/CGCCAATATTTACGTGCTGCTA
CGCCAATATTTACGTGCTGCTA
UAGCAGCACGUAAAUAUUGGCG
hsa-miR-16
mmu-miR-16
rno-miR-16
NA
NA
1
Used
6
EAM179
/5AmMC6/AACACTGATTTCAAATGGTGCTA
AACACTGATTTCAAATGGTGCTA
UAGCACCAUUUGAAAUCAGUGU
hsa-miR-29b
mmu-miR-29b
rno-miR-29b
NA
NA
1
Used
7
EAM177
/5AmMC6/CACAAGATCGGATCTACGGGT
CACAAGATCGGATCTACGGGT
AACCCGUAGAUCCGAUCUUGUG
hsa-miR-99a
mmu-miR-99a
rno-miR-99a
NA
NA
1
Used
8
EAM175
/5AmMC6/ACAGGCCGGGACAAGTGCAATAT
ACAGGCCGGGACAAGTGCAATAT
UAUUGCACUUGUCCCGGCCUGU
hsa-miR-92
mmu-miR-92
rno-miR-92
NA
NA
1
Used
9
EAM168
/5AmMC6/TAACCCATGGAATTCAGTTCTCA
TAACCCATGGAATTCAGTTCTCA
UGAGAACUGAAUUCCAUGGGUU
hsa-miR-146
mmu-miR-146
rno-miR-146
NA
NA
1
Used
10
EAM161
/5AmMC6/AACCATACAACCTACTACCTCA
AACCATACAACCTACTACCTCA
UGAGGUAGUAGGUUGUAUGGUU
hsa-let-7c
mmu-let-7c
rno-let-7c
NA
NA
1
Used
11
EAM160
/5AmMC6/ACTTTCGGTTATCTAGCTTTAT
ACTTTCGGTTATCTAGCTTTAT
UAAAGCUAGAUAACCGAAAGU
hsa-miR-9*
mmu-miR-9*
NA
NA
NA
1
Used
12
EAM155
/5AmMC6/ATACATACTTCTTTACATTCCA
ATACATACTTCTTTACATTCCA
UGGAAUGUAAAGAAGUAUGUA
hsa-miR-1
mmu-miR-1
NA
NA
NA
1
Used
13
EAM289
/5AmMC6/GCTGAGTGTAGGATGTTTACA
GCTGAGTGTAGGATGTTTACA
UGUAAACAUCCUACACUCAGC
hsa-miR-30b
mmu-miR-30b
rno-miR-30b
NA
NA
1
Used
14
EAM283
/5AmMC6/ATGCCCTTTTAACATTGCACTG
ATGCCCTTTTAACATTGCACTG
CAGUGCAAUGUUAAAAGGGC
hsa-miR-130a
mmu-miR-130a
rno-miR-130a
NA
NA
1
Used
15
EAM282
/5AmMC6/TCCATAAAGTAGGAAACACTACA
TCCATAAAGTAGGAAACACTACA
UGUAGUGUUUCCUACUUUAUGGA
hsa-miR-142-3p
mmu-miR-142-3p
rno-miR-142-3p
NA
NA
1
Used
16
EAM281
/5AmMC6/CTACGCGTATTCTTAAGCAATAA
CTACGCGTATTCTTAAGCAATAA
UAUUGCUUAAGAAUACGCGUAG
hsa-miR-137
mmu-miR-137
rno-miR-137
NA
NA
1
Used
17
EAM280
/5AmMC6/AGCACAAACTACTACCTCA
AGCACAAACTACTACCTCA
UGAGGUAGUAGUUUGUGCU
hsa-let-7i
mmu-let-7i
rno-let-7i
NA
NA
1
Used
18
EAM279
/5AmMC6/CACAAGTTCGGATCTACGGGTT
CACAAGTTCGGATCTACGGGTT
AACCCGUAGAUCCGAACUUGUG
hsa-miR-100
mmu-miR-100
rno-miR-100
NA
NA
1
Used
19
EAM278
/5AmMC6/GCTACCTGCACTGTAAGCACTTTT
GCTACCTGCACTGTAAGCACTTTT
AAAAGUGCUUACAGUGCAGGUAGC
hsa-miR-106a
NA
NA
NA
NA
1
Used
20
EAM238
/5AmMC6/CACAAATTCGGATCTACAGGGTA
CACAAATTCGGATCTACAGGGTA
UACCCUGUAGAUCCGAAUUUGUG
hsa-miR-10a
mmu-miR-10a
rno-miR-10a
NA
NA
1
Used
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