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Platform GPL19895 Query DataSets for GPL19895
Status Public on Oct 01, 2015
Title Agilent-028500 Rhagoletis pomonella custom Agilent cDNA array V2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Rhagoletis pomonella
Manufacturer Agilent
Manufacture protocol 60-mer oligo probes designed from R. pomonella EST contigs and singletons using Agilent eArray v2.0 and synthesized in situ by an ink-jet printing (Agilent) method on glass slides.
 
Description Probesets:
CUST_233_PI425262546: One Reverse complement probe of 5803 unannotated Pomonella transcripts
CUST_4165_PI425262511: One Forward Pomonella probe for 5798 unannotated transcripts (with reverse printed in CUST_233_PI425262546)
CUST_1674_PI425262563: One Forward Pomonella probe for 2393 unannotated transcripts with no reverse printed
CUST_16052_PI425262503: Two Forward Pomonella probes for 14805 annotated transcripts
 
Submission date Mar 16, 2015
Last update date Oct 01, 2015
Contact name Gregory Ragland
E-mail(s) gragland@ksu.edu
Phone 7855326139
Organization name Kansas State University
Department Entomology
Street address 123 West Waters Hall
City Manhattan
State/province KS
ZIP/Postal code 66506
Country USA
 
Samples (20) GSM1635271, GSM1635272, GSM1635273, GSM1635274, GSM1635275, GSM1635276 
Series (1)
GSE66975 Gene expression in Rhagoletis pomonella and R. zephyria transplanted into snowberry and apple fruits

Data table header descriptions
ID
ProbeName Probe Name
AgilentControl
GeneName
Source
FlybaseId FlyBase identifier
GB_ACC TSA_acc; NCBI Transcriptome Shotgun Assembly (TSA) accession
SRA_ACC NCBI Sequence Read Archive (SRA) accession
SEQUENCE Probe sequence
SPOT_ID

Data table
ID ProbeName AgilentControl GeneName Source FlybaseId GB_ACC SRA_ACC SEQUENCE SPOT_ID
1 GE_BrightCorner Yes GE_BrightCorner CONTROL
2 DarkCorner Yes DarkCorner CONTROL
3 DarkCorner Yes DarkCorner CONTROL
4 DarkCorner Yes DarkCorner CONTROL
5 DarkCorner Yes DarkCorner CONTROL
6 DarkCorner Yes DarkCorner CONTROL
7 DarkCorner Yes DarkCorner CONTROL
8 DarkCorner Yes DarkCorner CONTROL
9 DarkCorner Yes DarkCorner CONTROL
10 DarkCorner Yes DarkCorner CONTROL
11 DarkCorner Yes DarkCorner CONTROL
12 CUST_5281_PI425262511 No E7OMS0H02DYUWA R.pomonella GTACACGATTTAGTTCGTTAGTGAAAATAGTAGTGTTGATGTTGGGAGGGGAAATATATA
13 CUST_4475_PI425262511 No EY1FUWY01ANZ5S R.pomonella ATTAACCGATTAAAATCTAATGTGTTATTTATATTATGCGACTTGATACAAAAGTTTTTT
14 CUST_15308_PI425262503 No contig21720 R.pomonella FBgn0036030 EZ137939 GGGCATATGAGAGATTGTCCTAAAATTCAGTGCATTGATGTATCAATGATGTTTGCTGAA
15 CUST_26973_PI425262503 No E7OMS0H02DLANE R.pomonella FBgn0036571 SRR005655.34021 TTTGACCTATCTTTGCCAATATGCCACTGTGATAGTGGAGTCGAATATCAGCACGAAAAG
16 CUST_27042_PI425262503 No E7OMS0H02EKCFK R.pomonella FBgn0000244 SRR005655.36464 GACCGAGGTGCACTTCAAGGTCACTCAACAGGGAATCACTCTCACCGACAATACGCGAAA
17 CUST_3722_PI425262503 No contig06828 R.pomonella FBgn0038938 EZ123047 CTGCCTTTATGTGGATCACAACGATACCGACGGCACTAGTTTTAATTTTCTACAAATACA
18 CUST_20925_PI425262503 No EY1FUWY01A38D4 R.pomonella FBgn0026593 SRR006566.56062 TTGAATAATCCGGCGGAATGTGCAGCCGTTATAAATCCATTCATTAATGCTCACAGGCCA
19 CUST_1157_PI425262511 No E7OMS0H01A98LJ R.pomonella AGTTACTTGGAACAGCCAAATTTCATGGTGGCGTCAAGCCATATCTGCAAGTAGTTGTGC
20 CUST_24908_PI425262503 No E7OMS0H01CE7ZH R.pomonella FBgn0031590 SRR005653.25176 ACGTTTTGGACAATGAAACCAACTTTATGATACGAGTTTCATGCTTTGTTGGATTAGGTA

Total number of rows: 45220

Table truncated, full table size 5820 Kbytes.




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