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Platform GPL19897 Query DataSets for GPL19897
Status Public on Mar 17, 2015
Title USDA-ARS PSMRU Campylobacter jejuni version 10
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Campylobacter jejuni
Manufacturer Produce Safety and Microbiology, USDA-ARS, Albany CA
Manufacture protocol PCR product array of ORF's from Campylobacter jejuni strains NCTC 11168, 81-176, RM1048, RM1050, RM3193 (260.94), RM1045, RM1555, 43446. PCR products resuspended in resuspended to an average concentration of 0.1-0.2 µg µl-1 in 20 µl of 50% dimethyl sulfoxide (DMSO) containing 0.3× Saline-Sodium Citrate (SSC). Spotted on Corning barcoded UltraGAPS slides using a GeneMachine Accent printer with ChipMaker pins.
Support glass
Coating aminosilane
 
Description non-commercial array
 
Submission date Mar 16, 2015
Last update date Mar 17, 2015
Contact name Craig T Parker
E-mail(s) CRAIG.PARKER@ARS.USDA.GOV
Phone 510-559-6187
Organization name USDA ARS
Department PSM
Street address 800 Buchanan St
City Albany
State/province CA
ZIP/Postal code 94710
Country USA
 
Samples (36) GSM1634698, GSM1634699, GSM1634700, GSM1634701, GSM1634702, GSM1634703 
Series (2)
GSE66942 Analysis of the Activity and Regulon of the Two-component Regulatory System Composed by Cjj1484 and Cjj1483 of Campylobacter jejuni
GSE86327 Microbiota-derived short-chain fatty acids modulate expression of Campylobacter jejuni determinants required for commensalism and virulence

Data table header descriptions
ID
BLOCK subarray
COLUMN column in subarray
ROW row in subarray
ORF ORF name
GENE Gene name
LOCATION Gene location within Genbank entry
STRAND Orientation of gene
GENOME_ACC Possible function of gene productGenBank sequence accession
PRODUCT Possible function of gene product
RM1221_ID C. jejuni strain RM1221 identification
SPOT_ID

Data table
ID BLOCK COLUMN ROW ORF GENE LOCATION STRAND GENOME_ACC PRODUCT RM1221_ID SPOT_ID
1 1 1 1 Cj0967 Cj0967 904409..906697 + AL111168 putative periplasmic protein Cj0967
2 1 2 1 Cj0967 Cj0967 904409..906697 + AL111168 putative periplasmic protein Cj0967
3 1 3 1 Cj1130c wlaB 1063207..1064901 - AL111168 ABC-type transport protein CJE1272 Cj1130c
4 1 4 1 Cj1130c wlaB 1063207..1064901 - AL111168 ABC-type transport protein CJE1272 Cj1130c
5 1 5 1 Cj1399c hydA2 1333149..1334642 - AL111168 putative Ni/Fe-hydrogenase small subunit CJE1586 Cj1399c
6 1 6 1 Cj1399c hydA2 1333149..1334642 - AL111168 putative Ni/Fe-hydrogenase small subunit CJE1586 Cj1399c
7 1 7 1 Cj0608 Cj0608 567573..568943 + AL111168 putative outer membrane protein CJE0711 Cj0608
8 1 8 1 Cj0608 Cj0608 567573..568943 + AL111168 putative outer membrane protein CJE0711 Cj0608
9 1 9 1 Cj0393c Cj0393c 360241..361587 - AL111168 putative oxidoreductase CJE0442 Cj0393c
10 1 10 1 Cj0393c Cj0393c 360241..361587 - AL111168 putative oxidoreductase CJE0442 Cj0393c
11 1 11 1 Cj1605c dapD 1532359..1533519 - AL111168 possible 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase CJE1777 Cj1605c
12 1 12 1 Cj1605c dapD 1532359..1533519 - AL111168 possible 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase CJE1777 Cj1605c
13 1 13 1 Cj1609 Cj1609 1536751..1537911 + AL111168 possible sulfate adenylyltransferase CJE1781 Cj1609
14 1 14 1 Cj1609 Cj1609 1536751..1537911 + AL111168 possible sulfate adenylyltransferase CJE1781 Cj1609
15 1 15 1 Cj1533c Cj1533c 1464608..1465645 - AL111168 putative helix-turn-helix containsing protein CJE1704 Cj1533c
16 1 16 1 Cj1533c Cj1533c 1464608..1465645 - AL111168 putative helix-turn-helix containsing protein CJE1704 Cj1533c
17 1 17 1 Cj0793 Cj0793 743359..744378 + AL111168 signal transduction histidine kinase CJE0884 Cj0793
18 1 18 1 Cj0793 Cj0793 743359..744378 + AL111168 signal transduction histidine kinase CJE0884 Cj0793
19 1 1 2 Cj0029 ansA 37667..38662 + AL111168 cytoplasmic L-asparaginase CJE0029 Cj0029
20 1 2 2 Cj0029 ansA 37667..38662 + AL111168 cytoplasmic L-asparaginase CJE0029 Cj0029

Total number of rows: 5184

Table truncated, full table size 390 Kbytes.




Download family Format
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Supplementary data files not provided
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