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| Status |
Public on Aug 12, 2015 |
| Title |
Agilent_045521_wheat_5Aphysical_map_8x15k |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Triticum aestivum |
| Manufacturer |
Agilent |
| Manufacture protocol |
see manufacturer's web site at http://www.agilent.com/
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| Description |
wheat cultivar "Chinese spring"
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| Submission date |
Mar 17, 2015 |
| Last update date |
Aug 14, 2015 |
| Contact name |
Delfina Barabaschi |
| E-mail(s) |
delfina.barabaschi@entecra.it
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| Organization name |
CRA-Genomics Research Centre
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| Street address |
Via San Protaso 302
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| City |
Fiorenzuola d'Arda |
| ZIP/Postal code |
29017 |
| Country |
Italy |
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| Samples (118)
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GSM1635630, GSM1635631, GSM1635632, GSM1635633, GSM1635634, GSM1635635
GSM1635636, GSM1635637, GSM1635638, GSM1635639, GSM1635640, GSM1635641, GSM1635642, GSM1635643, GSM1635644, GSM1635645, GSM1635646, GSM1635647, GSM1635648, GSM1635649, GSM1635650, GSM1635651, GSM1635652, GSM1635653, GSM1635654, GSM1635655, GSM1635656, GSM1635657, GSM1635658, GSM1635659, GSM1635660, GSM1635661, GSM1635662, GSM1635663, GSM1635664, GSM1635665, GSM1635666, GSM1635667, GSM1635668, GSM1635669, GSM1635670, GSM1635671, GSM1635672, GSM1635673, GSM1635674, GSM1635675, GSM1635676, GSM1635677, GSM1635678, GSM1635679, GSM1635680, GSM1635681, GSM1635682, GSM1635683, GSM1635684, GSM1635685, GSM1635686, GSM1635687, GSM1635688, GSM1635689, GSM1635690, GSM1635691, GSM1635692, GSM1635693, GSM1635694, GSM1635695, GSM1635696, GSM1635697, GSM1635698, GSM1635699, GSM1635700, GSM1635701, GSM1635702, GSM1635703, GSM1635704, GSM1635705, GSM1635706, GSM1635707, GSM1635708, GSM1635709, GSM1635710, GSM1635711, GSM1635712, GSM1635713, GSM1635714, GSM1635715, GSM1635716, GSM1635717, GSM1635718, GSM1635719, GSM1635720, GSM1635721, GSM1635722, GSM1635723, GSM1635724, GSM1635725, GSM1635726, GSM1635727, GSM1635728, GSM1635729, GSM1635730, GSM1635731, GSM1635732, GSM1635733, GSM1635734, GSM1635735, GSM1635736, GSM1635737, GSM1635738, GSM1635739, GSM1635740, GSM1635741, GSM1635742, GSM1635743, GSM1635744, GSM1635745, GSM1635746, GSM1635747
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| Series (1) |
| GSE66996 |
Physical mapping of bread wheat chromosome 5A: an integrated approach |
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| Data table header descriptions |
| ID |
Probe ID |
| SEQUENCE |
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| GB_ACC |
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| PRJNA61773_contig_ID |
contig identifier from the bioproject database (http://www.ncbi.nlm.nih.gov/bioproject/PRJNA61773) |
| URGI_contig_ID |
contig identifier from the URGI Seq Repository (http://wheat-urgi.versailles.inra.fr/Seq-Repository/Genes-annotations) |
| GG_marker_ID |
marker identifier from GrainGenes database (http://wheat.pw.usda.gov/cgi-bin/GG3/browse.cgi) |
| Quraishi_wheat_accession |
wheat accessions from Quraishi, U.M.,et al. 2009. Genomics 9(4):473?484. doi: 10.1007/s10142-009-0129-8 |
| cerealsDB_contig_ID |
contig identifier from Cereals DB (http://www.cerealsdb.uk.net/cerealgenomics/CerealsDB/taqman_chr_detail.php?chromosome=5A) |
| SPOT_ID |
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| Data table |
| ID |
SEQUENCE |
GB_ACC |
PRJNA61773_contig_ID |
URGI_contig_ID |
GG_marker_ID |
Quraishi_wheat_accession |
cerealsDB_contig_ID |
SPOT_ID |
| id_1_1 |
GAAATGCAACCATCATTCATCTATATAACTCCTTTGTGGCACATCACCAAGGTTCATTGG |
BF201243 |
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| id_1_2 |
GTGGGTTACAGGAACTGATGATGACCTTCCACCACCATATCCGAATAATCCGAATAATAG |
BF201243 |
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| id_1_4 |
TCTGTTCCCAGCACTCTAAATTTCTGCCTTGATTCAAATTAAGGGAATGGAGATCAACAG |
BF201243 |
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| id_10_37 |
ACGTCGACAAAATACATGGGCATAGCATATACAGGATCATATATGCACTAGCAAAGCAAT |
BE591395 |
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| id_10_38 |
TTACACAAAAGTGGGTAGATCTAACCAAGACAACAAGCATAGAACCGTAGCAAGATATCA |
BE591395 |
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| id_10_39 |
GCTTCTCTGTTTCAGTGCAGAAGGATAGCAACCAGCAAGAACTAGTAGGATTCGATGCCT |
BE591395 |
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| id_100_372 |
TAACTAAGAATTTCTCTGCTTATGTCAAACTATTGATGCAAATTATCTACAGTATTGTAG |
BE498933 |
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| id_100_373 |
CATACCTAAAGGATTCATCGCATTGTCGAGACAAAGAACCTAGCCCGGATATACGTTTGG |
BE498933 |
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| id_100_375 |
ATCTGATGAGAGTGATCGCTTTCGCTTCTGTGACATGATCGAAGGTCCACATCTGCAGCG |
BE498933 |
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| id_101_377 |
TGTGGTTGTCCTGGCCATAGCTCCGCCGAGTGATGGACAGGGCGATTGAGTCACTCTGCT |
BM135344 |
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| id_101_378 |
CTCCCTTTCAACATGGTGGATAACCATCCCTTCTTATTCACTTCTGCCTTTTCGGCAGCT |
BM135344 |
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| id_101_379 |
TATCATGATTACTCTAAATAGAAAGATCAAAGGGTCTGTCTAGTTACTGCAAATCTAAGT |
BM135344 |
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| id_102_380 |
GGCTCCGATCTTGGCTGCCATGGAGGTCAGAACAACATGCCGAGACAGGATCTAATCTCG |
BG263421 |
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| id_102_381 |
GTTTTCCATATATTTAGTTGGTGTCACAACAGTGATTTGAGCATCATGAAAATATAGGAA |
BG263421 |
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| id_102_382 |
TAGTATTTCTGGTTCATCAGTTTTGGTATTGGGATTGGTGGCTCTGGCGTGTCGTGATTT |
BG263421 |
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| id_103_383 |
ATATGCTACTAGGACTCCTACATTTGAATTGACCGATAACCATATAAATTATGACATCTT |
BE442892 |
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| id_103_384 |
CAGAATATTACAAGAAATACAAAAAGCCGTTAGCTGATGCTATCCATTCCGAAACATCAG |
BE442892 |
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| id_103_385 |
GCCTAAGCACAGTGACTCTACCTGGCCAAAATGTATGACGTCGTCATCACTGTGTTCTGG |
BE442892 |
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| id_104_387 |
TGCTAATCTGCACAATGGTAATTTGTTATCTGTGACTGACTAAAATGGGGAAAAAATATT |
BE352633 |
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| id_104_389 |
CAAGAACAACTGGAAAGTCTGATTACTGTCATAGAAACTTACTTTGCCAGATTTGCATGG |
BE352633 |
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Total number of rows: 12782
Table truncated, full table size 1265 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL19903_045521_D_GEO_20121129.txt.gz |
487.5 Kb |
(ftp)(http) |
TXT |
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