Spotted oligo array on glass. The whole maize array set 1.3 version contains 56310 unique probes from maize and array B contains 27190 of them. The number of total spots including empty and controls is 32448.
Transcriptional profiling of aluminum toxicity and tolerance responses in maize roots
Data table header descriptions
ID
Spot identifier for each feature
BLOCK
The block number in which the oligo was spotted (48 total)
ROW
The row within each block that the oligo was spotted (26 total)
COLUMN
The column within each block that the oligo was spotted (26 total)
VENDER_ID
The unique oligo ID assigned by Operon
NAME
The accession of the longest representative sequence that matches the oligo with 100% identity over 100% of the oligo sequence. The sequence can be an Assembled Zea Mays (AZM) genomic sequence (eg. ZM4_13684), a GenBank entry (eg. BG319830), a TIGR Maize Gene Index entry (TC233604) or a Maize Repeat entry (e.g. ZRSgTERTOOT22542).
GB_ACC
GenBank accession
SPOT_ID
TIGR_ID
The unique oligo ID assigned by the TIGR databases to each oligo
OLIGO_CATEGORY
A single or multiple letter code designating the database(s) source that this oligo was mapped to: G Gene Index, A AZM, R Maize Repeat Database, O Organelle, S Special
PUTATIVE_ANNOTATION
The putative annotation for this oligo. The annotation is generated by searching the representative longest sequence against a non-redundant amino acid database. The annotation from the top nraa hit (above certain cutoff (P_value of E-10)) was used as the putative annotation of the oligo. NA means no match was present in the nraa database above the cutoff value.
TOP_NRAA_HIT
Genbank accession number(s) for the clone.
OTHER_MAIZE_MATCH_100_100
The accession number of other maize matches of the oligo sequence with 100% identity over 100% of the oligo sequence. The sequence could be derived from the TIGR maize gene index, AZM, Maize Repeat database or other GenBank maize sequences. The accession numbers are separated by ; for the entries with more than 1 match.
MAIZE_MATCH_95_100
The accession numbers of the top 3 maize matches of the oligo sequence with greater than 95% identity over 100% of the oligo sequence, but less than 100% identity. The sequence could be derived from the TIGR maize gene index, AZM, Maize repeat database or other Genbank maize sequences. The accession numbers are separated by ; for the entries with more than 1 match. Note, we only provide the top 3 matches.
MATCH_RICE_MODEL
The accessions numbers of the top 3 rice models that the maize oligo align with. The longest representative sequence (the sequence in Name field) was searched against the TIGR Rice Annotation Database (Release 2) and the top 3 rice models above cutoff (P_value E-25) were listed in this field. The rice model names are separated by ; for the entries with more than 1 match.
EC
The putative EC assignment for the oligo. Multiple EC# were connected by |. The longest representative sequence (the sequence in Name field) was searched against the nraa database and go.pep database to get the EC assignment using cutoff E-25 (P_value).
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