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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 01, 2015 |
| Title |
Agilent-025238 human 4x44k microarray, customized for lncRNAs |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Agilent |
| Manufacture protocol |
See manufacturer's website (www.agilent.com).
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| Description |
Microarray designed to analyze human large non coding RNA. Seven 60-mer probes per lncRNA gene.
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| Submission date |
Mar 25, 2015 |
| Last update date |
Jun 01, 2015 |
| Contact name |
Michael J Bannon |
| E-mail(s) |
mbannon@med.wayne.edu
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| Phone |
(313) 993-4271
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| Organization name |
Wayne State University School of Medicine
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| Department |
Pharmacology
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| Lab |
3302 Scott Hall
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| Street address |
540 E Canfield
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| City |
Detroit |
| State/province |
MI |
| ZIP/Postal code |
48202 |
| Country |
USA |
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| Samples (88)
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GSM1643706, GSM1643707, GSM1643708, GSM1643709, GSM1643710, GSM1643711
GSM1643712, GSM1643713, GSM1643714, GSM1643715, GSM1643716, GSM1643717, GSM1643718, GSM1643719, GSM1643720, GSM1643721, GSM1643722, GSM1643723, GSM1643724, GSM1643725, GSM1643726, GSM1643727, GSM1643728, GSM1643729, GSM1643730, GSM1643731, GSM1643732, GSM1643733, GSM1643734, GSM1643735, GSM1643736, GSM1643737, GSM1643738, GSM1643739, GSM1643740, GSM1643741, GSM1643742, GSM1643743, GSM1643744, GSM1643745, GSM1643746, GSM1643747, GSM1643748, GSM1643749, GSM1643750, GSM1643751, GSM1643752, GSM1643753, GSM1643754, GSM1643755, GSM1643756, GSM1643757, GSM1643758, GSM1643759, GSM1643760, GSM1643761, GSM1643762, GSM1643763, GSM1643764, GSM1643765, GSM1643766, GSM1643767, GSM1643768, GSM1643769, GSM1643770, GSM1643771, GSM1643772, GSM1643773, GSM1643774, GSM1643775, GSM1643776, GSM1643777, GSM1643778, GSM1643779, GSM1643780, GSM1643781, GSM1643782, GSM1643783, GSM1643784, GSM1643785, GSM1643786, GSM1643787, GSM1643788, GSM1643789, GSM1643790, GSM1643791, GSM1643792, GSM1643793
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| Series (1) |
| GSE67281 |
Identification of Dysregulated Long Noncoding RNAs in the Midbrain of Human Cocaine Abusers |
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| Data table header descriptions |
| ID |
Agilent Feature Number |
| Row |
Row of the probe position |
| Col |
Column of the probe position |
| ProbeName |
Agilent probe names |
| GB_ACC |
GenBank Accession number of RNA probe target |
| SPOT_ID |
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| SEQUENCE |
Sequence of the probe |
| Chr_Coord |
Chromosome coordinate of the probe on the human genome (Feb 2009, GRCh37/hg19) |
| Data table |
| ID |
Row |
Col |
ProbeName |
GB_ACC |
SPOT_ID |
SEQUENCE |
Chr_Coord |
| 1 |
1 |
1 |
GE_BrightCorner |
|
CONTROL |
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|
| 2 |
1 |
2 |
DarkCorner |
|
CONTROL |
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| 3 |
1 |
3 |
DarkCorner |
|
CONTROL |
|
|
| 4 |
1 |
4 |
DarkCorner |
|
CONTROL |
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| 5 |
1 |
5 |
DarkCorner |
|
CONTROL |
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| 6 |
1 |
6 |
DarkCorner |
|
CONTROL |
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| 7 |
1 |
7 |
DarkCorner |
|
CONTROL |
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| 8 |
1 |
8 |
DarkCorner |
|
CONTROL |
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| 9 |
1 |
9 |
DarkCorner |
|
CONTROL |
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| 10 |
1 |
10 |
DarkCorner |
|
CONTROL |
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| 11 |
1 |
11 |
DarkCorner |
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CONTROL |
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| 12 |
1 |
12 |
CHIP_JH_SE3_6641 |
CR616688 |
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CATTTCCTAAAAGAGTGTTCTTGATTCTCTCGCTCTTTATAAGTAGACCCAGAAATCTTT |
chr5:177865723-177865783 - |
| 13 |
1 |
13 |
CHIP_JH_SE3_25174 |
AK055998 |
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CAGGAAGTAATCATCTCCCATCCTCTCTTTCAAGGAGTGAGACCAAACTTCAGAGCAACA |
chr5:169309722-169309782 - |
| 14 |
1 |
14 |
CHIP_JH_SE3_29822 |
BC042560 |
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CATTCAAACCACTTGATGTAACATTTTCATTTCTAGGGAGTTTTCTGTTTGGGAATCATC |
chr20:59387636-59387696 - |
| 15 |
1 |
15 |
RORY_SE3_2781 |
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hTF28339 |
TCTCTGGCTCATCAAAGCTAAATGCCGCAAGACCTATCTAGTTGCTGTGAATTATGCCAG |
chr19:30716156-30716216 + |
| 16 |
1 |
16 |
CHIP_JH_SE3_19848 |
AK130868 |
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CTGGACCTTTTCATCAGTGCTCACTGCTCTGTAGGATGAACCGAGCGAACCGCAGTGCTC |
chr6:168931613-168931673 - |
| 17 |
1 |
17 |
CHIP_JH_SE3_23719 |
CR617623 |
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ATAAACAGGGAGAAGATATGAAGTACATCTGCCTAACACCACGTTAGAAGAATCCCCGGG |
chr6:6686103-6686163 - |
| 18 |
1 |
18 |
CHIP_JH_SE3_31745 |
BC027456 |
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GCTCAGTCATGAGTGAAAACAGAGGAAATGTTTCTGAAAATATAACAAGTCAGTGGGAAA |
chr21:46419125-46419185 - |
| 19 |
1 |
19 |
CHIP_JH_SE3_21608 |
AK124080 |
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AACTTTCTATCAAAGAAATGGATGGAGGGTGGACAGGGATGCTGGGTGCTTTAGATTAGA |
chr19:34398980-34399040 + |
| 20 |
1 |
20 |
CONTROL_EPILEPSY_SE3_39 |
NM_052978 |
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AAATACCATACTAACTGCTAAAGCCCTCCAAGAGTCTTTCCTAGATGCAACGCAGAAGGC |
chr14:51463349-51463409 - |
Total number of rows: 45220
Table truncated, full table size 5493 Kbytes.
| Supplementary data files not provided |
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