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Platform GPL19981 Query DataSets for GPL19981
Status Public on Mar 20, 2018
Title Compugen Human and virus oligo array 16K
Technology type spotted oligonucleotide
Distribution non-commercial
Organisms Homo sapiens; Human alphaherpesvirus 1; Human alphaherpesvirus 2; Human alphaherpesvirus 3; Human betaherpesvirus 6; Human betaherpesvirus 7; Cucumber mosaic virus; Human gammaherpesvirus 8; Simian-Human immunodeficiency virus; human papillomavirus 72
Manufacturer Lineberger Comprehensive Cancer Center Genomics Core
Manufacture protocol unavailable
 
Description only viral oligo sequences are available (human oligo sequences unavailable)
An 18k array (a later version of the same array with additional human genes) is GPL550.
 
Submission date Apr 02, 2015
Last update date Mar 20, 2018
Contact name Jennifer Webster-Cyriaque
E-mail(s) Jennifer_Cyriaque@unc.edu
Organization name University of North Carolina at Chapel Hill
Department Dental Research
Street address 385 S. Columbia St.
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7455
Country USA
 
Samples (7) GSM1649088, GSM1649089, GSM1649090, GSM1649091, GSM1649092, GSM1649093 
Series (1)
GSE67532 Kaposi’s Sarcoma-associated Herpesvirus Reactivation by Bacteria Promotes the Hypoxia Response and Epigenetic Regulation

Data table header descriptions
ID
oligo_ID Compugen gene probe ID
GB_ACC GenBank Accession number
Gene_Symbol gene symbol
Gene_Name gene description
Entrez_Gene_ID Entrez gene ID
SEQUENCE oligo sequence

Data table
ID oligo_ID GB_ACC Gene_Symbol Gene_Name Entrez_Gene_ID SEQUENCE
340381 32513-001 AI676060 ERN2 Endoplasmic reticulum to nucleus signalling 2 10595
340405 32513-002 NM_024012 HTR5A 5-hydroxytryptamine (serotonin) receptor 5A 3361
340453 32513-004 NM_020988 GNAO1 Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O 2775
340476 32513-005 NM_000866 HTR1F 5-hydroxytryptamine (serotonin) receptor 1F 3355
340548 32513-008 NM_006311 NCOR1 Nuclear receptor co-repressor 1 9611
340382 32513-009 AA418082 PLB1 Phospholipase B1 151056
340430 32513-011 NM_002529 NTRK1 Neurotrophic tyrosine kinase, receptor, type 1 4914
340454 32513-012 NM_005633 SOS1 Son of sevenless homolog 1 (Drosophila) 6654
340477 32513-013 NM_002135 NR4A1 Nuclear receptor subfamily 4, group A, member 1 3164
340501 32513-014 NM_006917 RXRG Retinoid X receptor, gamma 6258
340525 32513-015 AI400617 PR48 Protein phosphatase 2A 48 kDa regulatory subunit 28227
340549 32513-016 AA054202 MGC1136 Hypothetical protein MGC1136 78986
340407 32513-018 NM_031498 GNGT2 Guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 2793
340455 32513-020 NM_021012 KCNJ12 Potassium inwardly-rectifying channel, subfamily J, member 12 3768
340526 32513-023 AA829327 PDE7A Phosphodiesterase 7A 5150
340550 32513-024 NM_004196 CDKL1 Cyclin-dependent kinase-like 1 (CDC2-related kinase) 8814
340408 32513-026 NM_001613 ACTA2 Actin, alpha 2, smooth muscle, aorta 59
340432 32513-027 NM_006178 NSF N-ethylmaleimide-sensitive factor 4905
340456 32513-028 NM_002110 HCK Hemopoietic cell kinase 3055
340479 32513-029 NM_001247 ENTPD6 Ectonucleoside triphosphate diphosphohydrolase 6 (putative function) 955

Total number of rows: 12087

Table truncated, full table size 1025 Kbytes.




Download family Format
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Supplementary data files not provided
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