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Platform GPL20021 Query DataSets for GPL20021
Status Public on Feb 09, 2017
Title NimbleGen Daphnia pulex Expression Array 12x135k (PROBE DESIGN ID)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Daphnia pulex
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description This is a custom design whole Daphnia genome expression array in 12-plex format manufactured by Roche Nimblegen. Genes based on Daphnia pulex annotated draft genome assembly GenBank accession number: ACJG00000000.
 
Submission date Apr 12, 2015
Last update date Feb 09, 2017
Contact name Jacqueline Lopez
E-mail(s) jacqueline.ann.lopez@gmail.com
Phone 574-631-1902
Organization name University of Notre Dame
Department Biology
Lab Pfrender Laboratory
Street address 019 Galvin Life Science Center
City Notre Dame
State/province Indiana
ZIP/Postal code 46556
Country USA
 
Samples (24) GSM1655691, GSM1655692, GSM1655693, GSM1655694, GSM1655695, GSM1655696 
Series (1)
GSE67781 Temporal profiling and network analysis of rhythmic gene expression and novel functional gene annotation in the water flea, Daphnia pulex
Relations
Alternative to GPL11278

Data table header descriptions
ID PROBE DESIGN ID
SEQ_ID
PROBE_ID
SEQUENCE
POSITION
X
Y

Data table
ID SEQ_ID PROBE_ID SEQUENCE POSITION X Y
8295_0056_0526 1000060_1_sc_30_1000060_1000180 1000060_1_sc_30_1000060_1000180P00001 CGGTGACACAACCACATTCTCTTCCAGTCCAGCAGACGTCCAGTCCGGTGCGTTGACACT 1 56 526
8295_0237_0309 100008_1_sc_67_100008_100137 100008_1_sc_67_100008_100137P00004 TCGTAGAGTACCATTACTATATTATCTTGAGATTTCAGTCAAATGTTTACAATTTAGTGA 4 237 309
8295_0087_0597 100009 100009_3_1399871_1400680_1_SC13_1399882_1400677P00 CACCACCACCATCACCACGGCGGAGGTCCCGGCCTGAGCAAAATGCACGGCATCGAGAAA 724 87 597
8295_0189_0525 100009 100009_4_1403128_1403367_1_SC13_1403155_1403360P00 CGTCGGCAGGATCGGCTTCGCACACGGACAGCGGCAGCGAGCAGGACAGCGTCAACGGCA 91 189 525
8295_0246_0224 100009 100009_5_1403624_1403706_1_SC13_1403624_1403706P00 TTAAACAACTTGACGTCCCTGCACTCTCCTCCTAGCTGCCCTGTTATATCAATATTCGAC 12 246 224
8295_0171_0075 100010_1_sc_76_100010_100385 100010_1_sc_76_100010_100385P00154 TCAATTGTCTCTGATGACATTTACAAAAGGCTGGAAGAAGTATTTAAACTTGACTGTCGA 154 171 75
8295_0063_0093 1000131_1_sc_15_1000131_1000301 1000131_1_sc_15_1000131_1000301P00033 TGAATTGTAAAAGATGCACCATCATATTCTACTTGTACTCTTATATCCAATGTCCAAAAA 33 63 93
8295_0181_0319 1000210_1_sc_8_1000216_1000403 1000210_1_sc_8_1000216_1000403P00001 GTTCGTGAACCTGATCAATCCAACTTCTCGATCCCTCATATGGAATTTTCTGATTTGGGC 1 181 319
8295_0014_0606 1000228_1_sc_5_1000228_1000303 1000228_1_sc_5_1000228_1000303P00005 GCAAAATACACCAGGAATTTGATTCACTCGTCGAATAAAATTGAGCCGCTTAATGATAGC 5 14 606
8295_0437_0407 1000235_1_sc_12_1000235_1000385 1000235_1_sc_12_1000235_1000385P00001 TCAATTGTGCTTTCGAATACCGCAATATACGAGTTCTTACTGTCAATAGTCGCCTGAATC 1 437 407
8295_0184_0400 1000302_1_sc_1_1000302_1002651 1000302_1_sc_1_1000302_1002651P00649 TGTCTAGCTAGCTCTTGATAACCGACACGGCCAGACGATCGGTTGCTTAGTTTCGTTGCG 649 184 400
8295_0385_0289 1000302_2_sc_1_1000302_1002651 1000302_2_sc_1_1000302_1002651P00020 TTCCACATTTTTATCCAAAAGATTATGTGATAAAGACAGACTCTGTGAGTATATATATCT 20 385 289
8295_0335_0583 1000335_1_sc_24_1000335_1000630 1000335_1_sc_24_1000335_1000630P00035 AAAAAGTTTTATGCCCTCATACGCAAGAGGTTTGACAGTGATCACATACGAGCCAGAAGA 35 335 583
8295_0236_0346 1000336_1_sc_4_1000336_1001676 1000336_1_sc_4_1000336_1001676P00018 TTGAAATCGCGTGAAATTAACATGGAGAAAATGGCGGTCATAGCTTTTTGCCTGATGTTG 18 236 346
8295_0079_0373 1000336_2_sc_4_1000336_1001676 1000336_2_sc_4_1000336_1001676P00002 TGAAAAAATAATCACCATGAGCCAGTATATCGTAAAATAGATTGTTTATGTTGCCTAATG 2 79 373
8295_0072_0608 1000336_4_sc_4_1000336_1001676 1000336_4_sc_4_1000336_1001676P00001 GTATAAAGTCGGTTGATGGAGTGGAAGATATAAGCGCGTTCGCGAGTCGTGCTGCACGAG 1 72 608
8295_0298_0240 100034_1_sc_211_100034_100104 100034_1_sc_211_100034_100104P00001 TGTGATTGATCGTCCTCAGCGAGAAGTTAAAAGAACAACAATGGCTTCAGCACCACCCCC 1 298 240
8295_0444_0032 1000361_1_sc_15_1000361_1000506 1000361_1_sc_15_1000361_1000506P00001 ACTTTATATAACACACTACTGGTGATTGCCATCACAAGGCCAGCAGATGTAGCCATCACC 1 444 32
8295_0385_0501 100036 100036_2_1504384_1505256_1_SC13_1504408_1505253P00 GCAACGGAATAACTCGACGACGCAGCCGGCGGCGCCACCTGCTGCAACGGATCACCAAAC 458 385 501
8295_0437_0311 100036 100036_3_1505325_1505953_1_SC13_1505355_1505953P00 GACAGGATTGGGTGCCTCCGGCTGCCCCAACTCCAGCCCCAATGGTCAAGCAGGCCGACA 327 437 311

Total number of rows: 137090

Table truncated, full table size 19154 Kbytes.




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