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Platform GPL20132 Query DataSets for GPL20132
Status Public on May 02, 2015
Title LC_MRA-2001_USA_130918
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Ovis aries
Manufacturer LC Sciences
Manufacture protocol Custom sheep miRNA microarray targeting the mature miRNAs of Ovis aries. Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://miRBase.org) and sequences obtained by next-gen sequencing or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.
 
 
Submission date May 01, 2015
Last update date May 02, 2015
Contact name Christoph Eicken
E-mail(s) ceicken@lcsciences.com
Phone +1 (713) 664-7087
Organization name LC Sciences, LLC
Street address 2575 W. Bellfort
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
 
Samples (12) GSM1673833, GSM1673834, GSM1673835, GSM1673836, GSM1673837, GSM1673838 
Series (1)
GSE68496 Regulation of microRNA during cardiomyocyte maturation in sheep

Data table header descriptions
ID
miRNA_ID miRNA Accession No. in miRBase
Reporter BioSequence Database Entry[mirna]
Reporter BioSequence Type BioSequence type of the probe on the chip
Reporter BioSequence Polymer Type BioSequence polymer type of the probe on the chip
Reporter Group [role] General function of the particular probe on the chip: experimental / control
Reporter Control Type Specific function of the particular probe on the chip
Reporter Comment Target sequence (5' to 3') of the probe
SPOT_ID Spot ID

Data table
ID miRNA_ID Reporter BioSequence Database Entry[mirna] Reporter BioSequence Type Reporter BioSequence Polymer Type Reporter Group [role] Reporter Control Type Reporter Comment SPOT_ID
oar-let-7a_1ss12GA ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGAUUGUAUAGUU oar-let-7a_1ss12GA
mmu-mir-8112-p5_1ss22GA ss_oligo DNA experimental Target Seq (5' to 3') UGCCUCUCCGCCACCUCCACCA mmu-mir-8112-p5_1ss22GA
bta-let-7a-3p bta-let-7a-3p MIMAT0004330 ss_oligo DNA experimental Target Seq (5' to 3') CUAUACAAUCUACUGUCUUUC
bta-let-7a-5p bta-let-7a-5p MIMAT0003844 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGGUUGUAUAGUU
bta-mir-7857-p3_1ss1TA ss_oligo DNA experimental Target Seq (5' to 3') AUUGUUCUCCAACCUGGCUCUUU bta-mir-7857-p3_1ss1TA
bta-let-7a-5p_L+4 ss_oligo DNA experimental Target Seq (5' to 3') UGGUUGAGGUAGUAGGUUGUAUAGUU bta-let-7a-5p_L+4
ggo-let-7a-p3_1ss22AT ss_oligo DNA experimental Target Seq (5' to 3') UACAAUCUACUGUCUUUCCUGU ggo-let-7a-p3_1ss22AT
oar-let-7b oar-let-7b MIMAT0014963 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGGUUGUGUGGU
hsa-let-7b-3p_1ss22CT ss_oligo DNA experimental Target Seq (5' to 3') CUAUACAACCUACUGCCUUCCU hsa-let-7b-3p_1ss22CT
oar-let-7c oar-let-7c MIMAT0014964 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGGUUGUAUGGUU
mmu-let-7c-1-3p mmu-let-7c-1-3p MIMAT0004622 ss_oligo DNA experimental Target Seq (5' to 3') CUGUACAACCUUCUAGCUUUCC
mml-let-7a-5p_L+4 ss_oligo DNA experimental Target Seq (5' to 3') AAGCUGAGGUAGUAGGUUGUAUAGUU mml-let-7a-5p_L+4
oar-let-7d oar-let-7d MIMAT0030023 ss_oligo DNA experimental Target Seq (5' to 3') AGAGGUAGUAGGUUGCAUAG
ssc-let-7d-3p ssc-let-7d-3p MIMAT0025357 ss_oligo DNA experimental Target Seq (5' to 3') CUAUACGACCUGCUGCCUUUCU
bta-let-7e bta-let-7e MIMAT0004333 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGGAGGUUGUAUAGU
mmu-let-7e-3p mmu-let-7e-3p MIMAT0017016 ss_oligo DNA experimental Target Seq (5' to 3') CUAUACGGCCUCCUAGCUUUCC
mmu-let-7c-5p_R+2_1ss17AG ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGGUUGUGUGGUUAU mmu-let-7c-5p_R+2_1ss17AG
mml-let-7a-2-3p mml-let-7a-2-3p MIMAT0031041 ss_oligo DNA experimental Target Seq (5' to 3') CUGUACAGCCUCCUAGCUUUCC
PC-5p-256003_10 ss_oligo DNA experimental Target Seq (5' to 3') UUUUCUUGGGUUCUUUUAG PC-5p-256003_10
oan-let-7f-5p_R-1_1ss16TA ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGAUUGAAUAGU oan-let-7f-5p_R-1_1ss16TA

Total number of rows: 3152

Table truncated, full table size 347 Kbytes.




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