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Platform GPL20149 Query DataSets for GPL20149
Status Public on May 08, 2015
Title [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [CDF: GATExplorer_Ensembl v57]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's protocol
 
Description The probes were mapped to GENE LOCi by the 'HuexonSpecificGeneProbes.tsv.gz' CDF built by GATExplorer

The 'transcripts-human-annotation.R.gz' annotation file (http://bioinfow.dep.usal.es/xgate/downloads_v57/transcripts-human-annotation.R.gz) is available at http://bioinfow.dep.usal.es/xgate/mapping/mapping.php?content=annotationfiles
 
Submission date May 05, 2015
Last update date May 08, 2015
Contact name Paul Roy Heath
E-mail(s) p.heath@sheffield.ac.uk
Phone +44 114 2222254
Organization name University of Sheffield
Department Academic Neurology Unit
Lab Heath
Street address SITraN, 385a Glossop Road
City Sheffield
State/province S. Yorks
ZIP/Postal code S10 2HQ
Country United Kingdom
 
Samples (69) GSM1677001, GSM1677002, GSM1677003, GSM1677004, GSM1677005, GSM1677006 
Series (2)
GSE68607 C9ORF72 GGGGCC expanded repeats produce splicing dysregulation which correlates with disease severity in amyotrophic lateral sclerosis [HuEx-1_0-st]
GSE68608 C9ORF72 GGGGCC expanded repeats produce splicing dysregulation which correlates with disease severity in amyotrophic lateral sclerosis
Relations
Alternative to GPL5175 (Alternative CDF [official])

Data table header descriptions
ID transcript ID
transcript_symbol
chromosome
band
start_position
end_position
SPOT_ID
ORF Gene_symbol
biotype
gene_description

Data table
ID transcript_symbol chromosome band start_position end_position SPOT_ID ORF biotype gene_description
ENST00000456328 DDX11L10-202 1 p36.33 11874 14412 ENSG00000223972 DDX11L10 protein_coding DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 10 [Source:HGNC Symbol;Acc:14125]
ENST00000450305 DDX11L10-201 1 p36.33 12010 13670 ENSG00000223972 DDX11L10 protein_coding DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 10 [Source:HGNC Symbol;Acc:14125]
ENST00000438504 WASH5P-203 1 p36.33 14363 29370 ENSG00000227232 WASH5P protein_coding WAS protein family homolog 5 pseudogene [Source:HGNC Symbol;Acc:33884]
ENST00000423562 WASH5P-201 1 p36.33 14363 29370 ENSG00000227232 WASH5P protein_coding WAS protein family homolog 5 pseudogene [Source:HGNC Symbol;Acc:33884]
ENST00000488147 WASH5P-204 1 p36.33 14404 29570 ENSG00000227232 WASH5P protein_coding WAS protein family homolog 5 pseudogene [Source:HGNC Symbol;Acc:33884]
ENST00000430492 WASH5P-202 1 p36.33 17551 29343 ENSG00000227232 WASH5P protein_coding WAS protein family homolog 5 pseudogene [Source:HGNC Symbol;Acc:33884]
ENST00000473358 RP11-34P13-001 1 p36.33 29554 31097 ENSG00000243485 RP11-34P13.3 processed_transcript
ENST00000469289 RP11-34P13-002 1 p36.33 30267 31109 ENSG00000243485 RP11-34P13.3 processed_transcript
ENST00000408384 hsa-mir-1302-2 1 p36.33 30366 30503 ENSG00000221311 hsa-mir-1302-2 miRNA hsa-mir-1302-2 [Source:miRBase;Acc:MI0006363]
ENST00000417324 FAM138A-001 1 p36.33 34554 36081 ENSG00000237613 FAM138A protein_coding family with sequence similarity 138, member B [Source:HGNC Symbol;Acc:33582]
ENST00000461467 FAM138A-002 1 p36.33 35245 36073 ENSG00000237613 FAM138A protein_coding family with sequence similarity 138, member B [Source:HGNC Symbol;Acc:33582]
ENST00000492842 OR4G11P-001 1 p36.33 62948 63887 ENSG00000240361 OR4G11P pseudogene olfactory receptor, family 4, subfamily G, member 11 pseudogene [Source:HGNC Symbol;Acc:31276]
ENST00000326183 OR4F5-001 1 p36.33 69055 70108 ENSG00000177693 OR4F5 protein_coding olfactory receptor, family 4, subfamily F, member 5 [Source:HGNC Symbol;Acc:14825]
ENST00000466430 RP11-34P13-001 1 p36.33 89295 120932 ENSG00000238009 RP11-34P13.5 processed_transcript
ENST00000495576 RP11-34P13-001 1 p36.33 89551 91105 ENSG00000239945 RP11-34P13.2 processed_transcript
ENST00000477740 RP11-34P13-003 1 p36.33 92230 129217 ENSG00000238009 RP11-34P13.5 processed_transcript
ENST00000471248 RP11-34P13-002 1 p36.33 110953 129173 ENSG00000238009 RP11-34P13.5 processed_transcript
ENST00000453576 RP11-34P13-004 1 p36.33 129081 133566 ENSG00000238009 RP11-34P13.5 processed_transcript
ENST00000442987 RP11-34P13-001 1 p36.33 131104 133923 ENSG00000233750 RP11-34P13.7 pseudogene
ENST00000494149 RP11-34P13-001 1 p36.33 135247 138039 ENSG00000237683 RP11-34P13.9 protein_coding Putative uncharacterized protein ENSP00000388395 [Source:UniProtKB/TrEMBL;Acc:C9JKS6]

Total number of rows: 134266

Table truncated, full table size 19458 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL20149_HuexonSpecificGeneProbes.tsv.gz 40.4 Mb (ftp)(http) TSV
GPL20149_transcripts-human-annotation.txt.gz 3.1 Mb (ftp)(http) TXT

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