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Status |
Public on May 08, 2015 |
Title |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [CDF: GATExplorer_Ensembl v57] |
Technology type |
in situ oligonucleotide |
Distribution |
custom-commercial |
Organism |
Homo sapiens |
Manufacturer |
Affymetrix |
Manufacture protocol |
see manufacturer's protocol
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Description |
The probes were mapped to GENE LOCi by the 'HuexonSpecificGeneProbes.tsv.gz' CDF built by GATExplorer
The 'transcripts-human-annotation.R.gz' annotation file (http://bioinfow.dep.usal.es/xgate/downloads_v57/transcripts-human-annotation.R.gz) is available at http://bioinfow.dep.usal.es/xgate/mapping/mapping.php?content=annotationfiles
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Submission date |
May 05, 2015 |
Last update date |
May 08, 2015 |
Contact name |
Paul Roy Heath |
E-mail(s) |
p.heath@sheffield.ac.uk
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Phone |
+44 114 2222254
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Organization name |
University of Sheffield
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Department |
Academic Neurology Unit
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Lab |
Heath
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Street address |
SITraN, 385a Glossop Road
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City |
Sheffield |
State/province |
S. Yorks |
ZIP/Postal code |
S10 2HQ |
Country |
United Kingdom |
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Samples (69)
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GSM1677001, GSM1677002, GSM1677003, GSM1677004, GSM1677005, GSM1677006
GSM1677007, GSM1677008, GSM1677009, GSM1677010, GSM1677011, GSM1677012, GSM1677013, GSM1677014, GSM1677015, GSM1677016, GSM1677017, GSM1677018, GSM1677019, GSM1677020, GSM1677021, GSM1677022, GSM1677023, GSM1677024, GSM1677025, GSM1677026, GSM1677027, GSM1677028, GSM1677029, GSM1677030, GSM1677031, GSM1677032, GSM1677033, GSM1677034, GSM1677035, GSM1677036, GSM1677037, GSM1677038, GSM1677039, GSM1677040, GSM1677041, GSM1677042, GSM1677043, GSM1677044, GSM1677045, GSM1677046, GSM1677047, GSM1677048, GSM1677049, GSM1677050, GSM1677051, GSM1677052, GSM1677053, GSM1677054, GSM1677055, GSM1677056, GSM1677057, GSM1677058, GSM1677059, GSM1677060, GSM1677061, GSM1677062, GSM1677063, GSM1677064, GSM1677065, GSM1677066, GSM1677067, GSM1677068, GSM1677069
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Series (2) |
GSE68607 |
C9ORF72 GGGGCC expanded repeats produce splicing dysregulation which correlates with disease severity in amyotrophic lateral sclerosis [HuEx-1_0-st] |
GSE68608 |
C9ORF72 GGGGCC expanded repeats produce splicing dysregulation which correlates with disease severity in amyotrophic lateral sclerosis |
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Relations |
Alternative to |
GPL5175 (Alternative CDF [official]) |
Data table header descriptions |
ID |
transcript ID |
transcript_symbol |
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chromosome |
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band |
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start_position |
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end_position |
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SPOT_ID |
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ORF |
Gene_symbol |
biotype |
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gene_description |
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Data table |
ID |
transcript_symbol |
chromosome |
band |
start_position |
end_position |
SPOT_ID |
ORF |
biotype |
gene_description |
ENST00000456328 |
DDX11L10-202 |
1 |
p36.33 |
11874 |
14412 |
ENSG00000223972 |
DDX11L10 |
protein_coding |
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 10 [Source:HGNC Symbol;Acc:14125] |
ENST00000450305 |
DDX11L10-201 |
1 |
p36.33 |
12010 |
13670 |
ENSG00000223972 |
DDX11L10 |
protein_coding |
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 10 [Source:HGNC Symbol;Acc:14125] |
ENST00000438504 |
WASH5P-203 |
1 |
p36.33 |
14363 |
29370 |
ENSG00000227232 |
WASH5P |
protein_coding |
WAS protein family homolog 5 pseudogene [Source:HGNC Symbol;Acc:33884] |
ENST00000423562 |
WASH5P-201 |
1 |
p36.33 |
14363 |
29370 |
ENSG00000227232 |
WASH5P |
protein_coding |
WAS protein family homolog 5 pseudogene [Source:HGNC Symbol;Acc:33884] |
ENST00000488147 |
WASH5P-204 |
1 |
p36.33 |
14404 |
29570 |
ENSG00000227232 |
WASH5P |
protein_coding |
WAS protein family homolog 5 pseudogene [Source:HGNC Symbol;Acc:33884] |
ENST00000430492 |
WASH5P-202 |
1 |
p36.33 |
17551 |
29343 |
ENSG00000227232 |
WASH5P |
protein_coding |
WAS protein family homolog 5 pseudogene [Source:HGNC Symbol;Acc:33884] |
ENST00000473358 |
RP11-34P13-001 |
1 |
p36.33 |
29554 |
31097 |
ENSG00000243485 |
RP11-34P13.3 |
processed_transcript |
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ENST00000469289 |
RP11-34P13-002 |
1 |
p36.33 |
30267 |
31109 |
ENSG00000243485 |
RP11-34P13.3 |
processed_transcript |
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ENST00000408384 |
hsa-mir-1302-2 |
1 |
p36.33 |
30366 |
30503 |
ENSG00000221311 |
hsa-mir-1302-2 |
miRNA |
hsa-mir-1302-2 [Source:miRBase;Acc:MI0006363] |
ENST00000417324 |
FAM138A-001 |
1 |
p36.33 |
34554 |
36081 |
ENSG00000237613 |
FAM138A |
protein_coding |
family with sequence similarity 138, member B [Source:HGNC Symbol;Acc:33582] |
ENST00000461467 |
FAM138A-002 |
1 |
p36.33 |
35245 |
36073 |
ENSG00000237613 |
FAM138A |
protein_coding |
family with sequence similarity 138, member B [Source:HGNC Symbol;Acc:33582] |
ENST00000492842 |
OR4G11P-001 |
1 |
p36.33 |
62948 |
63887 |
ENSG00000240361 |
OR4G11P |
pseudogene |
olfactory receptor, family 4, subfamily G, member 11 pseudogene [Source:HGNC Symbol;Acc:31276] |
ENST00000326183 |
OR4F5-001 |
1 |
p36.33 |
69055 |
70108 |
ENSG00000177693 |
OR4F5 |
protein_coding |
olfactory receptor, family 4, subfamily F, member 5 [Source:HGNC Symbol;Acc:14825] |
ENST00000466430 |
RP11-34P13-001 |
1 |
p36.33 |
89295 |
120932 |
ENSG00000238009 |
RP11-34P13.5 |
processed_transcript |
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ENST00000495576 |
RP11-34P13-001 |
1 |
p36.33 |
89551 |
91105 |
ENSG00000239945 |
RP11-34P13.2 |
processed_transcript |
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ENST00000477740 |
RP11-34P13-003 |
1 |
p36.33 |
92230 |
129217 |
ENSG00000238009 |
RP11-34P13.5 |
processed_transcript |
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ENST00000471248 |
RP11-34P13-002 |
1 |
p36.33 |
110953 |
129173 |
ENSG00000238009 |
RP11-34P13.5 |
processed_transcript |
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ENST00000453576 |
RP11-34P13-004 |
1 |
p36.33 |
129081 |
133566 |
ENSG00000238009 |
RP11-34P13.5 |
processed_transcript |
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ENST00000442987 |
RP11-34P13-001 |
1 |
p36.33 |
131104 |
133923 |
ENSG00000233750 |
RP11-34P13.7 |
pseudogene |
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ENST00000494149 |
RP11-34P13-001 |
1 |
p36.33 |
135247 |
138039 |
ENSG00000237683 |
RP11-34P13.9 |
protein_coding |
Putative uncharacterized protein ENSP00000388395 [Source:UniProtKB/TrEMBL;Acc:C9JKS6] |
Total number of rows: 134266
Table truncated, full table size 19458 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GPL20149_HuexonSpecificGeneProbes.tsv.gz |
40.4 Mb |
(ftp)(http) |
TSV |
GPL20149_transcripts-human-annotation.txt.gz |
3.1 Mb |
(ftp)(http) |
TXT |
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