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Platform GPL20334 Query DataSets for GPL20334
Status Public on Jun 15, 2015
Title [EquGene-1_1-st] Equus caballus Gene 1.1 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Equus caballus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description #%create_date=Wed Apr 2 13:06:24 2014 PDT
#%chip_type=EquGene-1_1-st-v1
#%lib_set_name=EquGene-1_1-st
#%lib_set_version=v1
#%genome-species=Equus caballus
#%genome-version=equcab2
#%genome-version-ucsc=equcab2
#%genome-lifted-method=NONE
#%genome-lifted_from-species=Equus caballus
#%genome-lifted_from-version-ucsc=equcab2
#%netaffx-annotation-date=2013-08-30
#%netaffx-annotation-netaffx-build=34
 
Submission date Jun 15, 2015
Last update date Jun 15, 2015
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (6) GSM1711547, GSM1711548, GSM1711549, GSM1711552, GSM1711553, GSM1711554
Series (1)
GSE69871 Expression data from lipopolysaccharide treated and untreated equine alveolar macrophages and basal comparison with peritoneal macrophages

Data table header descriptions
ID
probeset_id
seqname
strand
start
stop
total_probes
gene_assignment
mrna_assignment
swissprot
unigene
GO_biological_process
GO_cellular_component
GO_molecular_function
pathway
protein_domains
crosshyb_type
category
SPOT_ID

Data table
ID probeset_id seqname strand start stop total_probes gene_assignment mrna_assignment swissprot unigene GO_biological_process GO_cellular_component GO_molecular_function pathway protein_domains crosshyb_type category SPOT_ID
14932336 14932336 chr1 + 11193 15975 22 ENSECAT00000013004 // LOC100067156 // synaptonemal complex central element protein 1-like // --- // 100067156 /// XM_001497266 // LOC100067156 // synaptonemal complex central element protein 1-like // --- // 100067156 ENSECAT00000013004 // ENSEMBL // cdna:known_by_projection chromosome:EquCab2:1:11193:15975:1 gene:ENSECAG00000012421 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 22 // 22 // 0 /// XM_001497266 // RefSeq // PREDICTED: Equus caballus synaptonemal complex central element protein 1-like (LOC100067156), mRNA. // chr1 // 100 // 95 // 21 // 21 // 0 /// GENSCAN00000068593 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:7127:16275:1 transcript_biotype:protein_coding // chr1 // 100 // 91 // 20 // 20 // 0 ENSECAT00000013004 // F6SJ81 --- ENSECAT00000013004 // GO:0008152 // metabolic process // inferred from electronic annotation /// ENSECAT00000013004 // GO:0007130 // synaptonemal complex assembly // inferred from electronic annotation /// ENSECAT00000013004 // GO:0070193 // synaptonemal complex organization // inferred from electronic annotation ENSECAT00000013004 // GO:0000795 // synaptonemal complex // inferred from electronic annotation /// ENSECAT00000013004 // GO:0000801 // central element // inferred from electronic annotation ENSECAT00000013004 // GO:0005515 // protein binding // inferred from electronic annotation /// ENSECAT00000013004 // GO:0003824 // catalytic activity // inferred from electronic annotation /// ENSECAT00000013004 // GO:0030170 // pyridoxal phosphate binding // inferred from electronic annotation --- --- 1 main chr1(+):11193-15975
14932347 14932347 chr1 + 293601 294509 16 ENSECAT00000001055 // LOC100066391 // olfactory receptor 226-like // --- // 100066391 /// XM_001501752 // LOC100066391 // olfactory receptor 226-like // --- // 100066391 ENSECAT00000001055 // ENSEMBL // cdna:known chromosome:EquCab2:1:293601:294509:1 gene:ENSECAG00000001094 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 16 // 16 // 0 /// XM_001501752 // RefSeq // PREDICTED: Equus caballus olfactory receptor 226-like, transcript variant 1 (LOC100066391), mRNA. // chr1 // 100 // 94 // 15 // 15 // 0 /// GENSCAN00000068599 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:288636:309183:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 16 // 16 // 0 ENSECAT00000001055 // F7DVU6 --- ENSECAT00000001055 // GO:0007165 // signal transduction // inferred from electronic annotation /// ENSECAT00000001055 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// ENSECAT00000001055 // GO:0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from electronic annotation /// ENSECAT00000001055 // GO:0007608 // sensory perception of smell // inferred from electronic annotation /// ENSECAT00000001055 // GO:0050896 // response to stimulus // inferred from electronic annotation ENSECAT00000001055 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENSECAT00000001055 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSECAT00000001055 // GO:0016020 // membrane // inferred from electronic annotation ENSECAT00000001055 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// ENSECAT00000001055 // GO:0004872 // receptor activity // inferred from electronic annotation /// ENSECAT00000001055 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// ENSECAT00000001055 // GO:0004984 // olfactory receptor activity // inferred from electronic annotation --- ENSECAT00000001055 // Pfam // IPR000276 // G protein-coupled receptor, rhodopsin-like 1 main chr1(+):293601-294509
14932349 14932349 chr1 + 351175 353296 8 --- ENSECAT00000012777 // ENSEMBL // cdna:known chromosome:EquCab2:1:351175:353296:1 gene:ENSECAG00000012361 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 ENSECAT00000012777 // F6QZC6 --- --- --- ENSECAT00000012777 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// ENSECAT00000012777 // GO:0003677 // DNA binding // inferred from electronic annotation --- ENSECAT00000012777 // Pfam // IPR004875 // DDE superfamily endonuclease, CENP-B-like /// ENSECAT00000012777 // Pfam // IPR006600 // HTH CenpB-type DNA-binding domain /// ENSECAT00000012777 // Pfam // IPR007889 // DNA binding HTH domain, Psq-type 1 main chr1(+):351175-353296
14932355 14932355 chr1 + 357983 358900 15 ENSECAT00000002136 // LOC100066808 // olfactory receptor 6-like // --- // 100066808 /// XM_001496983 // LOC100066808 // olfactory receptor 6-like // --- // 100066808 ENSECAT00000002136 // ENSEMBL // cdna:known chromosome:EquCab2:1:357983:358900:1 gene:ENSECAG00000001719 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 15 // 15 // 0 /// XM_001496983 // RefSeq // PREDICTED: Equus caballus olfactory receptor 6-like (LOC100066808), mRNA. // chr1 // 100 // 93 // 14 // 14 // 0 /// GENSCAN00000068627 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:357983:358918:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 15 // 15 // 0 ENSECAT00000002136 // F6UUB4 --- ENSECAT00000002136 // GO:0007165 // signal transduction // inferred from electronic annotation /// ENSECAT00000002136 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// ENSECAT00000002136 // GO:0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from electronic annotation /// ENSECAT00000002136 // GO:0007608 // sensory perception of smell // inferred from electronic annotation /// ENSECAT00000002136 // GO:0050896 // response to stimulus // inferred from electronic annotation ENSECAT00000002136 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENSECAT00000002136 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSECAT00000002136 // GO:0016020 // membrane // inferred from electronic annotation ENSECAT00000002136 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// ENSECAT00000002136 // GO:0004872 // receptor activity // inferred from electronic annotation /// ENSECAT00000002136 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// ENSECAT00000002136 // GO:0004984 // olfactory receptor activity // inferred from electronic annotation --- ENSECAT00000002136 // Pfam // IPR000276 // G protein-coupled receptor, rhodopsin-like 1 main chr1(+):357983-358900
14932357 14932357 chr1 + 366344 368692 8 --- ENSECAT00000012997 // ENSEMBL // cdna:known chromosome:EquCab2:1:366344:367589:1 gene:ENSECAG00000012458 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 /// ENSECAT00000012985 // ENSEMBL // cdna:known chromosome:EquCab2:1:366344:368692:1 gene:ENSECAG00000012458 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 ENSECAT00000012997 // F6SJD8 /// ENSECAT00000012985 // F6SQR7 --- ENSECAT00000012997 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// ENSECAT00000012997 // GO:0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from electronic annotation /// ENSECAT00000012997 // GO:0007165 // signal transduction // inferred from electronic annotation /// ENSECAT00000012997 // GO:0007608 // sensory perception of smell // inferred from electronic annotation /// ENSECAT00000012997 // GO:0050896 // response to stimulus // inferred from electronic annotation /// ENSECAT00000012985 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// ENSECAT00000012985 // GO:0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from electronic annotation /// ENSECAT00000012985 // GO:0007165 // signal transduction // inferred from electronic annotation /// ENSECAT00000012985 // GO:0007608 // sensory perception of smell // inferred from electronic annotation /// ENSECAT00000012985 // GO:0050896 // response to stimulus // inferred from electronic annotation ENSECAT00000012997 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENSECAT00000012997 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSECAT00000012997 // GO:0016020 // membrane // inferred from electronic annotation /// ENSECAT00000012985 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENSECAT00000012985 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSECAT00000012985 // GO:0016020 // membrane // inferred from electronic annotation ENSECAT00000012997 // GO:0004984 // olfactory receptor activity // inferred from electronic annotation /// ENSECAT00000012997 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// ENSECAT00000012997 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// ENSECAT00000012985 // GO:0004984 // olfactory receptor activity // inferred from electronic annotation /// ENSECAT00000012985 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// ENSECAT00000012985 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation --- ENSECAT00000012997 // Pfam // IPR000276 // G protein-coupled receptor, rhodopsin-like /// ENSECAT00000012997 // Pfam // IPR019424 // 7TM GPCR, olfactory receptor/chemoreceptor Srsx /// ENSECAT00000012985 // Pfam // IPR000276 // G protein-coupled receptor, rhodopsin-like /// ENSECAT00000012985 // Pfam // IPR019424 // 7TM GPCR, olfactory receptor/chemoreceptor Srsx 3 main chr1(+):366344-368692
14932360 14932360 chr1 + 415149 421194 25 XM_001496935 // LOC100066748 // enoyl-CoA hydratase, mitochondrial-like // --- // 100066748 /// ENSECAT00000013377 // LOC100066748 // enoyl-CoA hydratase, mitochondrial-like // --- // 100066748 XM_001496935 // RefSeq // PREDICTED: Equus caballus enoyl-CoA hydratase, mitochondrial-like (LOC100066748), mRNA. // chr1 // 100 // 100 // 25 // 25 // 0 /// ENSECAT00000013377 // ENSEMBL // cdna:known_by_projection chromosome:EquCab2:1:415149:421194:1 gene:ENSECAG00000012703 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 0 /// GENSCAN00000068589 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:415009:428200:1 transcript_biotype:protein_coding // chr1 // 100 // 84 // 21 // 21 // 0 ENSECAT00000013377 // F6QV70 /// ENSECAT00000013377 // A6P3B8 ENSECAT00000013377 // Eca.6165 // --- ENSECAT00000013377 // GO:0008152 // metabolic process // inferred from electronic annotation ENSECAT00000013377 // GO:0005739 // mitochondrion // inferred from electronic annotation ENSECAT00000013377 // GO:0005515 // protein binding // inferred from electronic annotation /// ENSECAT00000013377 // GO:0003824 // catalytic activity // inferred from electronic annotation --- ENSECAT00000013377 // Pfam // IPR001753 // Crotonase superfamily 1 main chr1(+):415149-421194
14932368 14932368 chr1 + 424706 427858 23 ENSECAT00000018606 // LOC100066719 // uncharacterized LOC100066719 // --- // 100066719 /// XM_001496913 // LOC100066719 // uncharacterized LOC100066719 // --- // 100066719 ENSECAT00000018606 // ENSEMBL // cdna:known_by_projection chromosome:EquCab2:1:424706:427858:1 gene:ENSECAG00000017649 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 23 // 23 // 0 /// XM_001496913 // RefSeq // PREDICTED: Equus caballus hypothetical protein LOC100066719 (LOC100066719), mRNA. // chr1 // 96 // 100 // 22 // 23 // 0 /// GENSCAN00000068589 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:415009:428200:1 transcript_biotype:protein_coding // chr1 // 95 // 96 // 21 // 22 // 0 ENSECAT00000018606 // F6RW33 --- ENSECAT00000018606 // GO:0005996 // monosaccharide metabolic process // inferred from electronic annotation /// ENSECAT00000018606 // GO:0006004 // fucose metabolic process // inferred from electronic annotation --- ENSECAT00000018606 // GO:0016853 // isomerase activity // inferred from electronic annotation /// ENSECAT00000018606 // GO:0016857 // racemase and epimerase activity, acting on carbohydrates and derivatives // inferred from electronic annotation /// ENSECAT00000018606 // GO:0042806 // fucose binding // inferred from electronic annotation /// ENSECAT00000018606 // GO:0048029 // monosaccharide binding // inferred from electronic annotation --- ENSECAT00000018606 // Pfam // IPR007721 // D-ribose pyranase RbsD/L-fucose mutarotase FucU 1 main chr1(+):424706-427858
14932373 14932373 chr1 + 450989 453118 22 ENSECAT00000018616 // CALY // calcyon neuron-specific vesicular protein // --- // --- ENSECAT00000018616 // ENSEMBL // cdna:known_by_projection chromosome:EquCab2:1:450989:453118:1 gene:ENSECAG00000017666 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 22 // 22 // 0 ENSECAT00000018616 // F6RVU8 --- ENSECAT00000018616 // GO:0007212 // dopamine receptor signaling pathway // inferred from electronic annotation /// ENSECAT00000018616 // GO:0045807 // positive regulation of endocytosis // inferred from electronic annotation /// ENSECAT00000018616 // GO:0048268 // clathrin coat assembly // inferred from electronic annotation ENSECAT00000018616 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENSECAT00000018616 // GO:0005887 // integral to plasma membrane // inferred from electronic annotation /// ENSECAT00000018616 // GO:0031410 // cytoplasmic vesicle // inferred from electronic annotation ENSECAT00000018616 // GO:0032051 // clathrin light chain binding // inferred from electronic annotation /// ENSECAT00000018616 // GO:0050780 // dopamine receptor binding // inferred from electronic annotation --- ENSECAT00000018616 // Pfam // IPR009431 // Calcyon neuron-specific vesicular protein 1 main chr1(+):450989-453118
14932377 14932377 chr1 + 503759 503840 10 XM_001915573 // LOC100146619 // uncharacterized LOC100146619 // --- // 100146619 XM_001915573 // RefSeq // PREDICTED: Equus caballus hypothetical protein LOC100146619 (LOC100146619), mRNA. // chr1 // 100 // 100 // 10 // 10 // 0 /// GENSCAN00000049702 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:500046:504007:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 10 // 10 // 0 --- --- --- --- --- --- --- 3 main chr1(+):503759-503840
14932379 14932379 chr1 + 531558 551743 25 XM_001498997 // LOC100066555 // gamma-tubulin complex component 2-like // --- // 100066555 /// ENSECAT00000019978 // LOC100066555 // gamma-tubulin complex component 2-like // --- // 100066555 XM_001498997 // RefSeq // PREDICTED: Equus caballus gamma-tubulin complex component 2-like (LOC100066555), mRNA. // chr1 // 100 // 100 // 25 // 25 // 0 /// ENSECAT00000019978 // ENSEMBL // cdna:known_by_projection chromosome:EquCab2:1:531558:551743:1 gene:ENSECAG00000018844 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 0 /// GENSCAN00000049715 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:531558:542061:1 transcript_biotype:protein_coding // chr1 // 100 // 68 // 17 // 17 // 0 /// GENSCAN00000049709 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:548698:551865:1 transcript_biotype:protein_coding // chr1 // 100 // 28 // 7 // 7 // 0 ENSECAT00000019978 // F7AV85 --- ENSECAT00000019978 // GO:0000226 // microtubule cytoskeleton organization // inferred from electronic annotation ENSECAT00000019978 // GO:0000922 // spindle pole // inferred from electronic annotation /// ENSECAT00000019978 // GO:0005634 // nucleus // inferred from electronic annotation /// ENSECAT00000019978 // GO:0005813 // centrosome // inferred from electronic annotation /// ENSECAT00000019978 // GO:0005815 // microtubule organizing center // inferred from electronic annotation --- --- ENSECAT00000019978 // Pfam // IPR007259 // Spc97/Spc98 1 main chr1(+):531558-551743
14932390 14932390 chr1 + 891341 970278 25 ENSECAT00000007217 // TTC40 // tetratricopeptide repeat domain 40 // --- // --- ENSECAT00000007217 // ENSEMBL // cdna:known_by_projection chromosome:EquCab2:1:891341:970278:1 gene:ENSECAG00000006777 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 0 ENSECAT00000007217 // F7CMT4 --- --- --- --- --- --- 1 main chr1(+):891341-970278
14932416 14932416 chr1 + 1006857 1022999 26 --- ENSECAT00000014844 // ENSEMBL // cdna:known chromosome:EquCab2:1:1006857:1022999:1 gene:ENSECAG00000014205 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 26 // 26 // 0 ENSECAT00000014844 // F7AJI5 --- --- --- --- --- --- 1 main chr1(+):1006857-1022999
14932431 14932431 chr1 + 1562309 1610672 21 ENSECAT00000009655 // STK32C // serine/threonine kinase 32C // --- // 100051389 /// XM_001488099 // STK32C // serine/threonine kinase 32C // --- // 100051389 ENSECAT00000009655 // ENSEMBL // cdna:known_by_projection chromosome:EquCab2:1:1562309:1610672:1 gene:ENSECAG00000009210 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 21 // 21 // 0 /// XM_001488099 // RefSeq // PREDICTED: Equus caballus serine/threonine kinase 32C (STK32C), mRNA. // chr1 // 95 // 100 // 20 // 21 // 0 /// GENSCAN00000007774 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:1595823:1612665:1 transcript_biotype:protein_coding // chr1 // 100 // 67 // 14 // 14 // 0 ENSECAT00000009655 // F6WYT2 --- ENSECAT00000009655 // GO:0006468 // protein phosphorylation // inferred from electronic annotation --- ENSECAT00000009655 // GO:0004672 // protein kinase activity // inferred from electronic annotation /// ENSECAT00000009655 // GO:0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// ENSECAT00000009655 // GO:0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// ENSECAT00000009655 // GO:0005524 // ATP binding // inferred from electronic annotation /// ENSECAT00000009655 // GO:0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation --- ENSECAT00000009655 // Pfam // IPR000719 // Protein kinase, catalytic domain /// ENSECAT00000009655 // Pfam // IPR001245 // Serine-threonine/tyrosine-protein kinase catalytic domain 1 main chr1(+):1562309-1610672
14932442 14932442 chr1 + 1813265 1818659 23 XM_001488160 // LOC100051673 // BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like // --- // 100051673 /// ENSECAT00000018629 // LOC100051673 // BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like // --- // 100051673 XM_001488160 // RefSeq // PREDICTED: Equus caballus BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like (LOC100051673), mRNA. // chr1 // 100 // 100 // 23 // 23 // 0 /// ENSECAT00000018629 // ENSEMBL // cdna:known_by_projection chromosome:EquCab2:1:1813265:1818659:1 gene:ENSECAG00000017458 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 23 // 23 // 0 /// GENSCAN00000007758 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:1804329:1818365:1 transcript_biotype:protein_coding // chr1 // 100 // 87 // 20 // 20 // 0 ENSECAT00000018629 // F6QW00 ENSECAT00000018629 // Eca.5375 // --- ENSECAT00000018629 // GO:0006915 // apoptotic process // inferred from electronic annotation /// ENSECAT00000018629 // GO:0006309 // apoptotic DNA fragmentation // inferred from electronic annotation /// ENSECAT00000018629 // GO:0006338 // chromatin remodeling // inferred from electronic annotation /// ENSECAT00000018629 // GO:0072593 // reactive oxygen species metabolic process // inferred from electronic annotation /// ENSECAT00000018629 // GO:0006917 // induction of apoptosis // inferred from electronic annotation /// ENSECAT00000018629 // GO:0008219 // cell death // inferred from electronic annotation /// ENSECAT00000018629 // GO:0008634 // negative regulation of survival gene product expression // inferred from electronic annotation /// ENSECAT00000018629 // GO:0010637 // negative regulation of mitochondrial fusion // inferred from electronic annotation /// ENSECAT00000018629 // GO:0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// ENSECAT00000018629 // GO:0035694 // mitochondrial protein catabolic process // inferred from electronic annotation /// ENSECAT00000018629 // GO:0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// ENSECAT00000018629 // GO:0043243 // positive regulation of protein complex disassembly // inferred from electronic annotation /// ENSECAT00000018629 // GO:0043653 // mitochondrial fragmentation involved in apoptotic process // inferred from electronic annotation /// ENSECAT00000018629 // GO:0045837 // negative regulation of membrane potential // inferred from electronic annotation /// ENSECAT00000018629 // GO:0046902 // regulation of mitochondrial membrane permeability // inferred from electronic annotation /// ENSECAT00000018629 // GO:0050873 // brown fat cell differentiation // inferred from electronic annotation /// ENSECAT00000018629 // GO:0051607 // defense response to virus // inferred from electronic annotation /// ENSECAT00000018629 // GO:0071279 // cellular response to cobalt ion // inferred from electronic annotation /// ENSECAT00000018629 // GO:0071456 // cellular response to hypoxia // inferred from electronic annotation /// ENSECAT00000018629 // GO:0090141 // positive regulation of mitochondrial fission // inferred from electronic annotation /// ENSECAT00000018629 // GO:0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from electronic annotation /// ENSECAT00000018629 // GO:0097193 // intrinsic apoptotic signaling pathway // inferred from electronic annotation /// ENSECAT00000018629 // GO:0008626 // granzyme-mediated apoptotic signaling pathway // inferred from electronic annotation /// ENSECAT00000018629 // GO:0097345 // mitochondrial outer membrane permeabilization // inferred from electronic annotation ENSECAT00000018629 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENSECAT00000018629 // GO:0005739 // mitochondrion // inferred from electronic annotation /// ENSECAT00000018629 // GO:0005634 // nucleus // inferred from electronic annotation /// ENSECAT00000018629 // GO:0005635 // nuclear envelope // inferred from electronic annotation /// ENSECAT00000018629 // GO:0005740 // mitochondrial envelope // inferred from electronic annotation /// ENSECAT00000018629 // GO:0005741 // mitochondrial outer membrane // inferred from electronic annotation /// ENSECAT00000018629 // GO:0031307 // integral to mitochondrial outer membrane // inferred from electronic annotation /// ENSECAT00000018629 // GO:0031966 // mitochondrial membrane // inferred from electronic annotation ENSECAT00000018629 // GO:0005515 // protein binding // inferred from electronic annotation /// ENSECAT00000018629 // GO:0042802 // identical protein binding // inferred from electronic annotation /// ENSECAT00000018629 // GO:0042803 // protein homodimerization activity // inferred from electronic annotation /// ENSECAT00000018629 // GO:0046982 // protein heterodimerization activity // inferred from electronic annotation /// ENSECAT00000018629 // GO:0051020 // GTPase binding // inferred from electronic annotation --- ENSECAT00000018629 // Pfam // IPR010548 // BNIP3 1 main chr1(+):1813265-1818659
14932448 14932448 chr1 + 2442539 2619310 23 ENSECAT00000026901 // TCERG1L // transcription elongation regulator 1-like // --- // 100051859 /// XM_001915720 // TCERG1L // transcription elongation regulator 1-like // --- // 100051859 ENSECAT00000026901 // ENSEMBL // cdna:known_by_projection chromosome:EquCab2:1:2442539:2619310:1 gene:ENSECAG00000024936 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 23 // 23 // 0 /// XM_001915720 // RefSeq // PREDICTED: Equus caballus transcription elongation regulator 1-like (TCERG1L), mRNA. // chr1 // 100 // 96 // 22 // 22 // 0 /// GENSCAN00000099064 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:2538584:2600143:1 transcript_biotype:protein_coding // chr1 // 100 // 43 // 10 // 10 // 0 /// GENSCAN00000099088 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:2607803:2622126:1 transcript_biotype:protein_coding // chr1 // 100 // 26 // 6 // 6 // 0 /// GENSCAN00000039971 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:2433709:2443237:1 transcript_biotype:protein_coding // chr1 // 100 // 13 // 3 // 3 // 0 ENSECAT00000026901 // F6PIJ9 --- --- --- --- --- ENSECAT00000026901 // Pfam // IPR002713 // FF domain 1 main chr1(+):2442539-2619310
14932458 14932458 chr1 + 5313968 5331586 26 XM_001489412 // MKI67 // antigen identified by monoclonal antibody Ki-67 // --- // 100055048 /// ENSECAT00000008486 // MKI67 // antigen identified by monoclonal antibody Ki-67 // --- // 100055048 XM_001489412 // RefSeq // PREDICTED: Equus caballus antigen identified by monoclonal antibody Ki-67 (MKI67), mRNA. // chr1 // 100 // 100 // 26 // 26 // 0 /// ENSECAT00000008486 // ENSEMBL // cdna:known chromosome:EquCab2:1:5313968:5331586:1 gene:ENSECAG00000008385 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 26 // 26 // 0 /// GENSCAN00000027792 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:5203425:5336542:1 transcript_biotype:protein_coding // chr1 // 100 // 50 // 13 // 13 // 0 ENSECAT00000008486 // F6VB46 --- --- --- --- --- --- 1 main chr1(+):5313968-5331586
14932468 14932468 chr1 + 5333785 5336419 21 ENSECAT00000008904 // MKI67 // antigen identified by monoclonal antibody Ki-67 // --- // 100055048 ENSECAT00000008904 // ENSEMBL // cdna:known chromosome:EquCab2:1:5333785:5336419:1 gene:ENSECAG00000008785 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 21 // 21 // 0 ENSECAT00000008904 // F6TGQ4 --- --- --- --- --- ENSECAT00000008904 // Pfam // IPR012568 // K167R 1 main chr1(+):5333785-5336419
14932472 14932472 chr1 + 5525388 5537944 22 ENSECAT00000025468 // LOC100049935 // clarin-3-like // --- // 100049935 /// XM_001488624 // LOC100049935 // clarin-3-like // --- // 100049935 ENSECAT00000025468 // ENSEMBL // cdna:known_by_projection chromosome:EquCab2:1:5525388:5537944:1 gene:ENSECAG00000023786 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 22 // 22 // 0 /// XM_001488624 // RefSeq // PREDICTED: Equus caballus clarin-3-like (LOC100049935), mRNA. // chr1 // 100 // 91 // 20 // 20 // 0 /// GENSCAN00000013972 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:5502460:5537944:1 transcript_biotype:protein_coding // chr1 // 100 // 95 // 21 // 21 // 0 ENSECAT00000025468 // F7BXA0 /// XM_001488624 // F7BXA0 --- --- ENSECAT00000025468 // GO:0016021 // integral to membrane // inferred from electronic annotation /// XM_001488624 // GO:0016021 // integral to membrane // inferred from electronic annotation --- --- --- 1 main chr1(+):5525388-5537944
14932476 14932476 chr1 + 6135209 6302038 24 ENSECAT00000005010 // LOC100050001 // protein FAM196A-like // --- // 100050001 /// XM_001488676 // LOC100050001 // protein FAM196A-like // --- // 100050001 ENSECAT00000005010 // ENSEMBL // cdna:known_by_projection chromosome:EquCab2:1:6135209:6302038:1 gene:ENSECAG00000005053 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 24 // 24 // 0 /// XM_001488676 // RefSeq // PREDICTED: Equus caballus protein FAM196A-like (LOC100050001), mRNA. // chr1 // 100 // 54 // 13 // 13 // 0 /// GENSCAN00000070585 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:6135837:6177606:1 transcript_biotype:protein_coding // chr1 // 100 // 25 // 6 // 6 // 0 ENSECAT00000005010 // F6PXJ7 /// XM_001488676 // F6PXJ7 --- --- --- --- --- --- 1 main chr1(+):6135209-6302038
14932481 14932481 chr1 + 6694657 6771126 22 ENSECAT00000010343 // LOC100050066 // uncharacterized protein C10orf90-like // --- // 100050066 /// XM_001488777 // LOC100050066 // uncharacterized protein C10orf90-like // --- // 100050066 ENSECAT00000010343 // ENSEMBL // cdna:known_by_projection chromosome:EquCab2:1:6694657:6771126:1 gene:ENSECAG00000010056 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 22 // 22 // 0 /// XM_001488777 // RefSeq // PREDICTED: Equus caballus uncharacterized protein C10orf90-like (LOC100050066), mRNA. // chr1 // 100 // 100 // 22 // 22 // 0 /// GENSCAN00000025029 // ENSEMBL // cdna:genscan chromosome:EquCab2:1:6629819:6706631:1 transcript_biotype:protein_coding // chr1 // 100 // 27 // 6 // 6 // 0 ENSECAT00000010343 // F7B477 --- ENSECAT00000010343 // GO:0006974 // response to DNA damage stimulus // inferred from electronic annotation /// ENSECAT00000010343 // GO:0007095 // mitotic G2 DNA damage checkpoint // inferred from electronic annotation /// ENSECAT00000010343 // GO:0009411 // response to UV // inferred from electronic annotation /// ENSECAT00000010343 // GO:0010212 // response to ionizing radiation // inferred from electronic annotation /// ENSECAT00000010343 // GO:0050821 // protein stabilization // inferred from electronic annotation /// ENSECAT00000010343 // GO:0030308 // negative regulation of cell growth // inferred from electronic annotation ENSECAT00000010343 // GO:0005737 // cytoplasm // inferred from electronic annotation /// ENSECAT00000010343 // GO:0005813 // centrosome // inferred from electronic annotation /// ENSECAT00000010343 // GO:0015629 // actin cytoskeleton // inferred from electronic annotation ENSECAT00000010343 // GO:0042826 // histone deacetylase binding // inferred from electronic annotation --- --- 1 main chr1(+):6694657-6771126

Total number of rows: 30559

Table truncated, full table size 41835 Kbytes.




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