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Platform GPL2055 Query DataSets for GPL2055
Status Public on Jun 29, 2005
Title Human tiling array using Nimblegen platform, set 4 of 38
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
 
Description High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16. There are a total of 38 arrays. This is set 4.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab
 
Web link http://www.nimblegen.com
Contributor(s) Kim TH, Barrera LO, Zhang M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B
Submission date May 17, 2005
Last update date Oct 27, 2010
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Samples (1) GSM51747
Series (1)
GSE2672 A high-resolution map of active promoters in the human genome

Data table header descriptions
ID
Probe ID probe id
Chromosome chromosome
Position position
SEQUENCE probe sequence
Comment comment

Data table
ID Probe ID Chromosome Position SEQUENCE Comment
1 CHR02P002755483 CHR2 2755483 TTGTTGTGTATATCAATGTCCTACAAATTAGTTGAGCGGTGGTGGTCACT SET04
2 CHR02P002755583 CHR2 2755583 AGCCCCTCAGGTCCACACAGCTGTAGGTGAGCAAAACTTCAGGGGAAGGA SET04
3 CHR02P002755683 CHR2 2755683 TGGAATGTGGAGAGGGAGAAGCTATGGACTGGCTTATTGTCTTTTGTGGT SET04
4 CHR02P002755783 CHR2 2755783 CTGAGACAGACAGTGCAGGGGAGAGCAGGCAGCCCTGGGCTCCCGGGAGC SET04
5 CHR02P002755966 CHR2 2755966 TGCTCCCTGCACGACACTACGGCACCCTTGAGAAGTTCGCCAGTGATTGC SET04
6 CHR02P002756066 CHR2 2756066 CACCGGAGTCCCCCTGTGACTGGGGACGATGGGGCAAAACAAGGCCCAGC SET04
7 CHR02P002756166 CHR2 2756166 AGCTGTGGCACCAACAAAATAGAGCTCATGCAACAAACACAGTGCCACGG SET04
8 CHR02P002756266 CHR2 2756266 TACCTAGAGTATGAACTAGTTACCATTTCACTACAAAGCTAGTTGGTAAG SET04
9 CHR02P002756367 CHR2 2756367 CTAACCATGTGTCTGCTTTAAATTCTAGGCTGTATAGACGTAATTGCCAA SET04
10 CHR02P002756467 CHR2 2756467 TTATCATGATGCTCTCTAGCACAGGGGAAGGAAATAGTTTTTTAAAAAAG SET04
11 CHR02P002756790 CHR2 2756790 GGTACTTAGTTAAAATCACAGTACACATACACACACAATATTTAAACTGA SET04
12 CHR02P002756890 CHR2 2756890 ACATCTTTCTAAGCTATGGTATTTCTTGCCTTAATAATAATTTATTTGTA SET04
13 CHR02P002756990 CHR2 2756990 CAGACATAAATGGATAAAAGGAGTGACTGTAGCGTATAACAGAAATAGTT SET04
14 CHR02P002757090 CHR2 2757090 ATCTCATTTGTTCATCTACAAGTGAAGGATCAAAAGAAATTAAGTTCTCC SET04
15 CHR02P002757190 CHR2 2757190 TTTGATCCATTCTTTCACTAGATGTTCATGTTTACGCACCTGTTTTTTTG SET04
16 CHR02P002757290 CHR2 2757290 GTCAGACTCCAGCCTGAGAAGGAAAGGGGGCTTCTGGGTGAAGTCATGAC SET04
17 CHR02P002757390 CHR2 2757390 TCCACTGAGCAGATTTTCGGTGTCATTCTTAGGAGCCGGATGCTACTGGA SET04
18 CHR02P002757490 CHR2 2757490 GTGTCCTCTGCTGACCTTGCGAGGCTGCAGTGAAGATCAGCCGAGACAGG SET04
19 CHR02P002757590 CHR2 2757590 TTGATCATCGCATTCCCGGCAGAGGCCCTCCTGTGGACACTAAAGCTGAG SET04
20 CHR02P002757690 CHR2 2757690 GCTGAAAGCTGAATGTTAGGGCTTCAGGAAAACAGAGCAAAGGAAATGCA SET04

Total number of rows: 389119

Table truncated, full table size 35598 Kbytes.




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