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Platform GPL2060 Query DataSets for GPL2060
Status Public on Jun 29, 2005
Title Human tiling array using Nimblegen platform, set 9 of 38
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
 
Description High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16. There are a total of 38 arrays. This is set 9.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab
 
Web link http://www.nimblegen.com/
Contributor(s) Kim TH, Barrera LO, Zhang M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B
Submission date May 17, 2005
Last update date Oct 27, 2010
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Samples (1) GSM51739
Series (1)
GSE2672 A high-resolution map of active promoters in the human genome

Data table header descriptions
ID
Probe ID probe id
Chromosome chromosome
Position position
SEQUENCE probe sequence
Comment comment

Data table
ID Probe ID Chromosome Position SEQUENCE Comment
1 CHR03P130427951 CHR3 130427951 ATGATTTCTGTCAGTGTGGAAGCATGTTGCCTCCAGCAGTCGTTAAAACT SET09
2 CHR03P130428051 CHR3 130428051 TGCTACTCTTGCTAGTAAACAAGCAAAAGGAAACTGCTAGGGCTCAGGGT SET09
3 CHR03P130428151 CHR3 130428151 TTCCCTGACACAGAAGGAAGAAGTGTGCAGGATATTCCTCTTTATCCTCA SET09
4 CHR03P130428499 CHR3 130428499 TGGATGTTCAGCACGGGATTTCTTACCTTCTCTTTAGAAGTAGGGACATC SET09
5 CHR03P130428599 CHR3 130428599 AAACATTCTGCTCTGTCATCCCCATGAGCCACAACTCTGCCAAACGGGGC SET09
6 CHR03P130428699 CHR3 130428699 CACACACTATTCAAACTATTCCGTCATAGCTTTGGAATACACAGGAAAGC SET09
7 CHR03P130428799 CHR3 130428799 TCTTTGCTTGTCTGGTAAAAGCCTGCTTTTGTTATCAAGCCTTCCCAGCG SET09
8 CHR03P130428899 CHR3 130428899 AGGAAGGCCCAGGGGCCTCACTTGAAATAGCCACATCTAACCTTTGTAAA SET09
9 CHR03P130428999 CHR3 130428999 TTCCAGGAGAGGAAGAAGCGGGGAGAGACCAACAATGACCTGTTTCTGGC SET09
10 CHR03P130429427 CHR3 130429427 AAGAAATGAGGTTTGAGTATGTTAGAGTATGCCAAGGTAACCCACCCTGT SET09
11 CHR03P130429527 CHR3 130429527 TCCAGGTTGTTTTCCCTAAGACTGGTGCAGACAAAAACTAGCAATGGTCT SET09
12 CHR03P130429627 CHR3 130429627 GGTTGAAACTCACCTAAAACTGACCTTTAAGGCTGACACCAAAGGGGCAG SET09
13 CHR03P130429727 CHR3 130429727 CTACACCAGCACAATCCCTTCATTGAGTTGAGGGCTCAGGGCTTCAGGGC SET09
14 CHR03P130429827 CHR3 130429827 GTCTTCAGGAAGGAGCCGGTCCTGCCGATCATACAGGACGACATGGTGCC SET09
15 CHR03P130429927 CHR3 130429927 GGGCTTCTGGGAAGTCAGGCAGAGCCTCCGCCCTCCCATGTTAGCGCAGC SET09
16 CHR03P130430027 CHR3 130430027 TGATGGCAGAGATTCCCTTTTGCATTGGGACGGCCCCCATGAACCTTACT SET09
17 CHR03P130430127 CHR3 130430127 GACCAGGCTCCTGATGGCTTCTGTGGGAAGGAGTTGCACTAAGGAGCCCA SET09
18 CHR03P130430227 CHR3 130430227 GGGTACATTGGGCAATGAGGGTCTTCCTTCCATCAAGGGGTTTTGTTAAC SET09
19 CHR03P130430327 CHR3 130430327 CTCATCGGCCATAACCTATTAGTGGGCTACTAATGGTAATTCTCCAGCTC SET09
20 CHR03P130430427 CHR3 130430427 GCTGTGCTCTTCCACCATCTATTCGACCCTGGAGCTGAAGGTGTGTTTGG SET09

Total number of rows: 389119

Table truncated, full table size 35949 Kbytes.




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Supplementary data files not provided
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