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Platform GPL20611 Query DataSets for GPL20611
Status Public on Jun 24, 2015
Title Agilent-026609 Maize Gene Expression 4x44K Microarray [Feature ID]
Technology type in situ oligonucleotide
Distribution commercial
Organism Zea mays
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16026609 or 2526609.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent probe name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jun 24, 2015
Last update date Jun 24, 2015
Contact name qian jin
E-mail(s) qianjin@shbiochip.com
Organization name MSP
Street address libing road
City shanghai
ZIP/Postal code 201203
Country China
 
Samples (20) GSM1720877, GSM1720878, GSM1720879, GSM1720880, GSM1720881, GSM1720882 
Series (1)
GSE70215 Rapid protein turnover and dynamic mRNA regulation drive the mitosis-meiosis transition in maize germinal cells
Relations
Alternative to GPL20575

Data table header descriptions
ID Agilent prober name
SPOT_ID
NAME NAME
CONTROL_TYPE Control Type
DISTANCE Distance to 3'
GENE_NO. Gene Number
CHROMOSOMAL_LOCATION Chromosomal Location
GENESYMBOL
SEQUENCE Sequence

Data table
ID SPOT_ID NAME CONTROL_TYPE DISTANCE GENE_NO. CHROMOSOMAL_LOCATION GENESYMBOL SEQUENCE
1 GE_BrightCorner GE_BrightCorner pos
2 DarkCorner DarkCorner pos
3 DarkCorner DarkCorner pos
4 DarkCorner DarkCorner pos
5 DarkCorner DarkCorner pos
6 DarkCorner DarkCorner pos
7 DarkCorner DarkCorner pos
8 DarkCorner DarkCorner pos
9 DarkCorner DarkCorner pos
10 DarkCorner DarkCorner pos
11 DarkCorner DarkCorner pos
12 ZM_34065_1 ZM_34065_1 FALSE 103 1 6:112271165..112271675:1 GRMZM2G366301 GTGCGACGGCTCACAACAATACACACATAAATTATTCACCAAAAAGAACTCAAGATTTTT
13 ZM_14043_1 ZM_14043_1 FALSE 1 6:164990952..164994330:1 GRMZM2G102605 TGTTTATTCTCTTGTTGGATCTTGCATGGACTATAATTTGGAAGCCACAAAACCACCTGA
14 ZM_30103_1 ZM_30103_1 FALSE 131 1:15933977..15941070:-1 GRMZM2G156486 GATTGATTTCCAAGTGCCACCCTACATGGCTATATATAGCCGGCAGCTTACACAAATGGA
15 ZM_20835_1 ZM_20835_1 FALSE 440 2:6469543..6478618:1 GRMZM2G305007 ATATGTCAAAATCCACATGGCACATGGCTCATTTGTGTATACCCTTCTCCATCGAAGCTT
16 ZM_23366_1 ZM_23366_1 FALSE 78 1:251141985..251149507:-1 GRMZM2G103672 CACATTTGGTGAAACTGTTTAGGTTAAGTCTTTAGTTCCTTTATGGAAGAGATGTCTTCT
17 ZM_04882_1 ZM_04882_1 FALSE 78 NM_001151631.1 TAACTAGTGATCAACAGTGACTGTGATGGGAAAGACTGAATAAAAGTACTAAAACGTTCA
18 ZM_10795_1 ZM_10795_1 FALSE 1:193184308..193190640:1 GRMZM2G424241 GCCTTCTCCTGTTTGTTAAACGCAAACATCAAATGGAGAAGAAATTCATCCATAAATTAC
19 ZM_06755_1 ZM_06755_1 FALSE 1 5:126888326..126891875:1 GRMZM2G144581 AGAAGGCGATCCCGTGAACTATGAATGGATGACCTTGTCTAGTTGTCTTTGAGCTTTGAC
20 ZM_37624_1 ZM_37624_1 FALSE 202 4:38138969..38145339:1 GRMZM2G162079 TCGAAGGAGTACAATATGACACATTATCAGTGGAATGCACACCCGTGGGAATGATCTTCG

Total number of rows: 45219

Table truncated, full table size 5766 Kbytes.




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Supplementary data files not provided
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