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Platform GPL20618 Query DataSets for GPL20618
Status Public on Jun 26, 2015
Title Arabidopsis thaliana V.3.0.3 IFC UNAM
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Arabidopsis thaliana
Manufacturer Unidad de Microarreglos, IFC UNAM, México
Manufacture protocol The thirty thousand 70-mers oligonucleotides (40uM, synthesized by Operon) were printed on 22mm (Y axis) x 75 mm ( X axis) glass slides, coated with super amine (Arraylt) using a SDDC robot (Virtek), organised in 12 meta-rows x 4 meta-columns, with a total number of spots per grid of 25 rows x 25 columns.
 
 
Submission date Jun 25, 2015
Last update date Jun 26, 2015
Contact name John P Délano-Frier
E-mail(s) jdelano@ira.cinvestav.mx
Organization name CINVESTAV Irapuato
Department Biotechnology and Biochemistry
Street address Km 9.6 del Libramiento Norte Carretera Irapuato-León SN
City Irapuato
State/province Guanajuato
ZIP/Postal code 36821
Country Mexico
 
Samples (11) GSM1722702, GSM1820671, GSM1820672, GSM1820673, GSM2060006, GSM2060007 
Series (5)
GSE70272 Transgenic Ah24-OE vs Wild type Col 0 Arabidopsis plants
GSE70861 Transgenic AhNF-YC-OE vs Wild type Col 0 Arabidopsis plants
GSE77815 Amaranth's transcription factors overexpression, AhERF and AhDOF, increase drought and salt tolerance in Arabidopsis thaliana

Data table header descriptions
ID TAIR7 transcript id number
TAIR ID
ORF
SEQUENCE Nucleotide sequence used as a probe in the array

Data table
ID TAIR ID ORF SEQUENCE
1 AT1G01010.1 AT1G01010 AAATCACGGCGGTCAGTGGCTGAGTGACTATATCGACCTGCAACAGCAAGTTCCTTACTTGGCACCTTAT
2 AT1G01910.3 AT1G01910 GTTTCTTTCCTCGCCATATTCTTGGAACTCACTTGCTTTCTACATGGGGGTCTTCTGGATCTGCGTTGTC
3 AT1G01020.2 AT1G01020 GCGGCGAGTGAACACAGATGCGTGGGATGTGGTTTTAGGGTAAAGTCATTGTTCATTCAATACTCTCCGG
4 AT1G01920.2 AT1G01920 CCTGCGCCATCTGTAGGATCCGGAGATACAATATGGGTTGAGGGGCTTGTTCCTGGCATTGACTTTTGCA
5 AT1G01030.1 AT1G01030 CTTCTCAATATTCCAACAGATTTCATCCATTGCCAGAATATAACTCCGTCCCGATTCACCGGGGCTTAAA
6 AT1G01930.1 AT1G01930 AAAGAGAGCAGCCGCTGCAGAAAGACGGATGGCATCACTTAACATTCAAAGCAGTTCAAGCACAAGTTAA
7 AT1G01040.1 AT1G01040 TGTGGTGAGATGGGACAGGACTTTTGGGATTCTCGAAGGTGGCAACGAGAGTTTGAGTCTAAGCAGGTTC
8 AT1G01940.1 AT1G01940 AGGTTCCCAAGAGTGCTGAGAACTTTTTGGCGTTGTGTGCTAGTGGCTACTACGATGGTACTATCTTTCA
9 AT1G01050.1 AT1G01050 ACTTGCTAGACCAACGGGCTTCACTTGTTTCTCTCCCAAAGTTTCTTCATCATCCTTGCGATAAAGAAAA
10 AT1G01950.1 AT1G01950 AATGAACGAAGTGAGTCAACAACTGATAGTGGACCAAGGTGGAATCAGCTTGCTATCTCTAACAGCTGCA
11 AT1G01060.4 AT1G01060 GTATAGCGTTTCAGGCTCTCTTTGCAAGAGAAAGATTGCCTCAAAGCTTTTCGCCTCCTCAAGTGGCAGA
12 AT1G01960.1 AT1G01960 AAGCTCCTCTGCTGCGCCTGGAGAACGAATCTTTCCAAACATGTATGACCTTCTTAGACAACCTCATCTC
13 AT1G01070.1 AT1G01070 GAAAGGAAAACAAGACCACAAATAACGTTTAGGCTAATGGTCGATCATTTCGTCAGTGGCCTTCTCGGGG
14 AT1G01970.1 AT1G01970 AAGCGCTTATGCGGCAAATTATTTGCTTCTCCCCCGAAAAGGGAAGCTTTTGCGATTTGTTGGGTGCTTG
15 AT1G01070.1 AT1G01070 TCTCACTCTCACTCTCACGGTGGGGCTTCCCACAACAACAACGATCAAGACAAGGCCAATAATTGGCTTC
16 AT1G01980.1 AT1G01980 TGGGAAAACAGAGCGATCTCATGTCTCTGCTGACCAAGGAGTTCCCCGAGCTTGGTCTGAAGCCGGAGAA
17 AT1G01080.1 AT1G01080 GTAATCTCTGTAGAGGTATCGCGAAATCCTCAGACGGGAGAGAGCCGTGGAAGCGGGTACGTGACAATGG
18 AT1G01990.1 AT1G01990 ACATGGAGGTTTACATTGATAAATGCCAAAAGGACAACGTCAAGGGTTACCTCAGATCCTGCAACCGATT
19 AT1G01090.1 AT1G01090 CAGACGCTAGTCCACAGCCCGGTCGCAGTCAGTTGCTAGAGAATGTGTTTGCTGATCCAAAAGGATTTGG
20 AT1G02000.1 AT1G02000 ACGCCTGGGAAATTCAAGATGATGGATAAATCCCCCTTCTTCCTGCACCGTACTCGTTGGCAATCCTCCG

Total number of rows: 29068

Table truncated, full table size 2789 Kbytes.




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Supplementary data files not provided
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