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Platform GPL2062 Query DataSets for GPL2062
Status Public on Jun 29, 2005
Title Human tiling array using Nimblegen platform, set 11 of 38
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
 
Description High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16. There are a total of 38 arrays. This is set 11.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab
 
Web link http://www.nimblegen.com/
Contributor(s) Kim TH, Barrera LO, Zhang M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B
Submission date May 17, 2005
Last update date Oct 27, 2010
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Samples (1) GSM51750
Series (1)
GSE2672 A high-resolution map of active promoters in the human genome

Data table header descriptions
ID
Probe ID probe id
Chromosome chromosome
Position position
SEQUENCE probe sequence
Comment comment

Data table
ID Probe ID Chromosome Position SEQUENCE Comment
1 CHR04P086866578 CHR4 86866578 TTTAAGGTGAACTTTGCTTTGGAAACACTTAAATTACAGGATCATTTTCT SET11
2 CHR04P086867629 CHR4 86867629 TGTGTATATTTTTTAAACTACTGCTTCTGTTCAGCTGTGAGACACTGTGG SET11
3 CHR04P086867729 CHR4 86867729 CCTTGATATTTTCCACGAAAGAAATTCCTGCTCCCTCCGACTTTTTTTTT SET11
4 CHR04P086867829 CHR4 86867829 TAATTTAAATGTATAACTTCACCTTTCCTATAAATTTGGTGAAAGTTTAG SET11
5 CHR04P086867929 CHR4 86867929 TCTTTCATGTTTACTATCTAGCTAGGCCTCCACAGCAGTCCAATAACAAA SET11
6 CHR04P086868144 CHR4 86868144 GTGAGGAACAAGCATACCAGCCTCTTGAACTTTGGCAGCTGGCCTATTTC SET11
7 CHR04P086868387 CHR4 86868387 ATTTTGGCTCAAAAAGAGAAAGAGAATGTGTAATTAACATCTTTGAAAGC SET11
8 CHR04P086868487 CHR4 86868487 ATTGATTTCAAGGTGTAACTTGTAACTTGTTTTTGGTTACATTTTTAAGC SET11
9 CHR04P086868587 CHR4 86868587 TAAAGTAAATTGAATATTCTCCACACTGTAGATTTTCAATTAATTCAGCC SET11
10 CHR04P086868687 CHR4 86868687 AAAACAACAAATAAGTCTGATGGCATTTAACACTTAAGAGATTTCATGCA SET11
11 CHR04P086868787 CHR4 86868787 CCTTGACCAGTCAAATAATCACTGAAGGTGAGTGAGAGAATGGATGAGGA SET11
12 CHR04P086868887 CHR4 86868887 AGGGAGAGTTGTTTCTGTGCAGGGCTTTTATTATCTCTCTGTTTGCAGTC SET11
13 CHR04P086868987 CHR4 86868987 TCCCTGACATGAGCCTGAGACTGGGACTTGATGACTCAGAGGGACTCCTT SET11
14 CHR04P086869087 CHR4 86869087 TCAGCTGGGTGAGACAGACTCTTCATCTGGAGCAAGGTGAGCCCTTTGTG SET11
15 CHR04P086869187 CHR4 86869187 AAGCTTTGAAAAATATAGGATGTGGTCTCAGAAACACTGGGTTATTTCTG SET11
16 CHR04P086869287 CHR4 86869287 TCATGGCTCAATGGTGTCCCTTCTGGGACTGTGCTTCTGATATATATTTC SET11
17 CHR04P086869387 CHR4 86869387 TAGCAAGTAACACTCGGACCAAATAAGGAGCAATAATAATAGTGGCATGT SET11
18 CHR04P086869487 CHR4 86869487 CTTAGAAATAGCCATTAAGTAAAATAAAATTATATTGAACTATTTGATGG SET11
19 CHR04P086869587 CHR4 86869587 GTGAAATGCTAGAATAATTCAGCAAGAGTAAATGACATGCAAAGGTCATA SET11
20 CHR04P086869687 CHR4 86869687 ATATATGTCATGTTAAGGTAGAATGTGATAAAATTACTGGTGATATTTTG SET11

Total number of rows: 382520

Table truncated, full table size 35313 Kbytes.




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