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Platform GPL20641 Query DataSets for GPL20641
Status Public on Jun 30, 2015
Title Illumina HumanOmni2.5M-8v1-1_B [data table]
Technology type oligonucleotide beads
Distribution commercial
Organism Homo sapiens
Manufacturer Illumina
Manufacture protocol see Illumina web site
 
Description Illumina HumanOmni25M-8v1-1_B
 
Submission date Jun 29, 2015
Last update date Jun 30, 2015
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (612) GSM1726629, GSM1726630, GSM1726631, GSM1726632, GSM1726633, GSM1726634 
Series (9)
GSE70374 Clinically Relevant Copy Number Variations Detected in Cerebral Palsy
GSE70770 Prostate cancer stratification using molecular profiles
GSE73011 Prostate cancer stratification using molecular profiles [CamCap genotype second set]

Data table header descriptions
ID locus identifier from the Illumina CG database
SPOT_ID SNP Illumina ID as originally provided by Illumina with array information
IlmnStrand
SNP SNP alleles
AddressA_ID
AlleleA_ProbeSeq
AddressB_ID
AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SourceSeq
TopGenomicSeq
BeadSetID
Exp_Clusters
RefStrand

Data table
ID SPOT_ID IlmnStrand SNP AddressA_ID AlleleA_ProbeSeq AddressB_ID AlleleB_ProbeSeq GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SourceSeq TopGenomicSeq BeadSetID Exp_Clusters RefStrand
200610-1 200610-1-0_B_R_1867864656 BOT [T/C] 0009803928 TTTTTAATGCAGGTTTGGTAGTTTAGGACCTGTGGGTTTGTTAGGTACTG 37.1 MT 2757 diploid Homo sapiens BGI 0 TOP GGCATAACACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAA[A/G]CAGTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGT GGCATAACACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAA[A/G]CAGTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGT 791 2 -
200610-10 200610-10-0_B_R_1867864658 BOT [T/C] 0021792978 TCTACGTCTATTCCTACTGTAAATATATGGTGTGCTCACACGATAAACCC 37.1 MT 6753 diploid Homo sapiens BGI 0 TOP TACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCT[A/G]GGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCC TACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCT[A/G]GGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCC 791 2 -
200610-100 200610-100-0_B_R_1867864660 BOT [T/C] 0069608915 TCTGTCCCAATGTATGGGATGGCGGATAGTAAGTTTGTAATTACTGTGGC 37.1 MT 15173 diploid Homo sapiens BGI 0 TOP CTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGG[A/G]GCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTAC CTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGG[A/G]GCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTAC 822 2 -
200610-102 200610-102-0_T_R_1867864662 TOP [A/G] 0040640294 TGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAGAT 37.1 MT 125 diploid Homo sapiens BGI 0 BOT TTGGTATTTTCGTCTGGGGGGTATGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAG[T/C]ATCTGTCTTTGATTCCTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTA TAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAGAT[A/G]CTGCGACATAGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCATACCCCCCAGACGAAAATACCAA 791 2 -
200610-104 200610-104-0_B_F_1867864664 BOT [T/C] 0040633918 CGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTAA 37.1 MT 212 diploid Homo sapiens BGI 0 BOT TTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTAA[T/C]TAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCTGCACAGCCACTTTCCACACAGACATCATAACAA TTGTTATGATGTCTGTGTGGAAAGTGGCTGTGCAGACATTCAATTGTTATTATTATGTCCTACAAGCATTAATTA[A/G]TTAACACACTTTAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAA 791 2 +
200610-105 200610-105-0_T_R_1867864667 TOP [A/G] 0086686956 TGTTATGATGTCTGTGTGGAAAGTGGCTGTGCAGACATTCAATTGTTATT 37.1 MT 236 diploid Homo sapiens BGI 0 BOT CTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAA[T/C]AATAACAATTGAATGTCTGCACAGCCACTTTCCACACAGACATCATAACAAAAAATTTCCACCA TGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGTGGCTGTGCAGACATTCAATTGTTATT[A/G]TTATGTCCTACAAGCATTAATTAATTAACACACTTTAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAG 791 2 -
200610-106 200610-106-0_T_R_1867864669 TOP [A/G] 0079751391 GGAAATTTTTTGTTATGATGTCTGTGTGGAAAGTGGCTGTGCAGACATTC 37.1 MT 246 diploid Homo sapiens BGI 0 BOT AATATTACAGGCGAACATACTTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAAT[T/C]GAATGTCTGCACAGCCACTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACCCCCCCTCCCCCGCTTCTGG CCAGAAGCGGGGGAGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGTGGCTGTGCAGACATTC[A/G]ATTGTTATTATTATGTCCTACAAGCATTAATTAATTAACACACTTTAGTAAGTATGTTCGCCTGTAATATT 791 2 -
200610-107 200610-107-0_B_F_1867864670 BOT [T/C] 0022767164 ACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATC 37.1 MT 484 diploid Homo sapiens BGI 0 BOT TATCTTTTGGCGGTATGCACTTTTAACAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATC[T/C]CATCAATACAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGAACCA TGGTTCGGGGTATGGGGTTAGCAGCGGTGTGTGTGTGCTGGGTAGGATGGGCGGGGGTTGTATTGATG[A/G]GATTAGTAGTATGGGAGTGGGAGGGGAAAATAATGTGTTAGTTGGGGGGTGACTGTTAAAAGTGCATACCGCCAAAAGATA 791 2 +
200610-108 200610-108-0_T_R_1867864673 TOP [A/G] 0033808890 AGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTGATTTAACTGTTG 37.1 MT 1109 diploid Homo sapiens BGI 0 BOT ACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACC[T/C]CAACAGTTAAATCAACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTG CACCGCCAGGTCCTTTGAGTTTTAAGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTGATTTAACTGTTG[A/G]GGTTTAGGGCTAAGCATAGTGGGGTATCTAATCCCAGTTTGGGTCTTAGCTATTGT 822 2 -
200610-109 200610-109-0_T_R_1867864675 TOP [A/G] 0069779106 CTTTGAGTTTTAAGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTG 37.1 MT 1121 diploid Homo sapiens BGI 0 BOT ACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAA[T/C]CAACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGG CCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTG[A/G]TTTAACTGTTGAGGTTTAGGGCTAAGCATAGTGGGGTATCTAATCCCAGTTTGGGTCTTAGCTATTGT 791 2 -
200610-110 200610-110-0_T_R_1867864679 TOP [A/G] 0040662251 GTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTT 37.1 MT 3029 diploid Homo sapiens BGI 0 BOT ATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTAT[T/C]AAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCT AGAAACCGACCTGGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTT[A/G]ATAGCGGCTGCACCATCGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTATTGTTGATATGGACTCTAGAAT 791 2 -
200610-111 200610-111-0_B_F_1867864680 BOT [T/C] 0014643828 CTAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTA 37.1 MT 3397 diploid Homo sapiens BGI 0 BOT CTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTA[T/C]ATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCC GGGTTGTAGTAGCCCGTAGGGGCCTACAACGTTGGGGCCTTTGCGTAGTTGTAT[A/G]TAGCCTAGAATTTTTCGTTCGGTAAGCATTAGGAATGCCATTGCGATTAGAATGGGTACAATGAG 791 2 +
200610-112 200610-112-0_T_R_1867864683 TOP [A/G] 0096667148 TCAGGGCGTAGTTTGAGTTTGATGCTCACCCTGATCAGAGGATTGAGTAA 37.1 MT 3645 diploid Homo sapiens BGI 0 BOT CTCTTCTACTATGAACCCCCCTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCG[T/C]TTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCG CGCCGATCAGGGCGTAGTTTGAGTTTGATGCTCACCCTGATCAGAGGATTGAGTAA[A/G]CGGCTAGGCTAGAGGTGGCTAGAATAAATAGGAGGCCTAGGTTGAGGTTGACCAGGGGGTTGGGTATGGGGAGGGGGGTTCATAGTAGAAGAG 791 2 -
200610-113 200610-113-0_T_R_1867864685 TOP [A/G] 0060803959 ATCAGGGCGTAGTTTGAGTTTGATGCTCACCCTGATCAGAGGATTGAGTA 37.1 MT 3646 diploid Homo sapiens BGI 0 BOT TCTTCTACTATGAACCCCCCTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCGT[T/C]TACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCG CGCCGATCAGGGCGTAGTTTGAGTTTGATGCTCACCCTGATCAGAGGATTGAGTA[A/G]ACGGCTAGGCTAGAGGTGGCTAGAATAAATAGGAGGCCTAGGTTGAGGTTGACCAGGGGGTTGGGTATGGGGAGGGGGGTTCATAGTAGAAGA 791 2 -
200610-114 200610-114-0_B_F_1867864686 BOT [T/C] 0006654908 GTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGA 37.1 MT 3827 diploid Homo sapiens BGI 0 BOT ATTCTACTATCAACATTACTAATAAGTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGA[T/C]TACTCCTGCCATCATGACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACCCCCTTC GAAGGGGGTTCGGTTGGTCTCTGCTAGTGTGGAGATAAATCATATTATGGCCAAGGGTCATGATGGCAGGAGTA[A/G]TCAGAGGTGTTCTTGTGTTGTGATAAGGGTGGAGAGGTTAAAGGAGCCACTTATTAGTAATGTTGATAGTAGAAT 791 2 +
200610-115 200610-115-0_T_R_1867864689 TOP [A/G] 0052655970 GTGTAGAGTTCAGGGGAGAGTGCGTCATATGTTGTTCCTAGGAAGATTGT 37.1 MT 4024 diploid Homo sapiens BGI 0 BOT TATTCTTCATAGCCGAATACACAAACATTATTATAATAAACACCCTCACCAC[T/C]ACAATCTTCCTAGGAACAACATATGACGCACTCTCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACT AGTAGGGTCTTGGTGACAAAATATGTTGTGTAGAGTTCAGGGGAGAGTGCGTCATATGTTGTTCCTAGGAAGATTGT[A/G]GTGGTGAGGGTGTTTATTATAATAATGTTTGTGTATTCGGCTATGAAGAATA 791 2 -
200610-116 200610-116-0_T_R_1867864691 TOP [A/G] 0099735592 GGTGTATGAGTTGGTCGTAGCGGAATCGGGGGTATGCTGTTCGAATCATA 37.1 MT 4118 diploid Homo sapiens BGI 0 BOT GCACTCTCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTC[T/C]TATGATTCGAACAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTCACCCTA TAGGGTGAGTGGTAGGAAGTTTTTTCATAGGAGGTGTATGAGTTGGTCGTAGCGGAATCGGGGGTATGCTGTTCGAATCATA[A/G]GAACAGGGAGGTTAGAAGTAGGGTCTTGGTGACAAAATATGTTGTGTAGAGTTCAGGGGAGAGTGC 791 2 -
200610-117 200610-117-0_T_R_1867864693 TOP [A/G] 0087635493 ATTTCTTAGGTTTGAGGGGGAATGCTGGAGATTGTAATGGGTATGGAGAC 37.1 MT 4219 diploid Homo sapiens BGI 0 BOT ACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTCACCCTAGCATTACTTATATGATA[T/C]GTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAACCTAAGAAATATGTCTGATAAAAGAGTTACTTTGATAGAGTA TACTCTATCAAAGTAACTCTTTTATCAGACATATTTCTTAGGTTTGAGGGGGAATGCTGGAGATTGTAATGGGTATGGAGAC[A/G]TATCATATAAGTAATGCTAGGGTGAGTGGTAGGAAGTTTTTTCATAGGAGGTGTATGAGTTGGTCGT 791 2 -
200610-118 200610-118-0_B_F_1867864694 BOT [T/C] 0080666840 GTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAAGCTGCCATCAAGTA 37.1 MT 4647 diploid Homo sapiens BGI 0 BOT TGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAAGCTGCCATCAAGTA[T/C]TTCCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTATCCTCTTCAAC GTTGAAGAGGATAGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAA[A/G]TACTTGATGGCAGCTTCTGTGGAACGAGGGTTTATTTTTTTGGTTAGAACTGGAATAAAAGCTAGCA 791 2 +
200610-119 200610-119-0_B_F_1867864696 BOT [T/C] 0094603157 AAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGT 37.1 MT 5049 diploid Homo sapiens BGI 0 BOT ATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGT[T/C]CTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCC GGATAATATAAATAGTTAAATTAAGAATGGTTATGTTAGGGTTGTACGGTAG[A/G]ACTGCTATTATTCATCCTATGTGGGTAATTGAGGAGTATGCTAAGATTTTGCGTAGCTGGGTTTGGTTTAAT 791 2 +

Total number of rows: 2391739

Table truncated, full table size 1006128 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GPL20641_HumanOmni2.5M-8v1-1_B.bpm.gz 93.3 Mb (ftp)(http) BPM
GPL20641_HumanOmni25M-8v1-1_B.csv.gz 248.1 Mb (ftp)(http) CSV

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