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Status
Public on Jul 14, 2015
Title
Agilent-069507 ArrayXS_Danio_rerio_V1 (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Danio rerio Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
OakLabs MyArray strategy, ArrayXS Zebrafish, September 2014, Zv9 release 75
Submission date
Jul 13, 2015
Last update date
Jul 14, 2015
Contact name
Michael Patrick Housley
Organization name
Max Planck Institute
Department
Developmental Genetics
Lab
Stainier, D
Street address
Ludwigstr. 43
City
Bad Nauheim
State/province
Hessen
ZIP/Postal code
61231
Country
Germany
Samples (143)
GSM1820647 , GSM1820648 , GSM1820649 , GSM1820650 , GSM1820651 , GSM1820652
GSM2081551 ,
GSM2081552 ,
GSM2138940 ,
GSM2138941 ,
GSM2138942 ,
GSM2138943 ,
GSM2138944 ,
GSM2138945 ,
GSM2138946 ,
GSM2138947 ,
GSM2283823 ,
GSM2283824 ,
GSM2359077 ,
GSM2359078 ,
GSM2359079 ,
GSM2359080 ,
GSM2388549 ,
GSM2388550 ,
GSM2388551 ,
GSM2388552 ,
GSM2388553 ,
GSM2388554 ,
GSM2388555 ,
GSM2388556 ,
GSM2388557 ,
GSM2388558 ,
GSM2388559 ,
GSM2388560 ,
GSM2388561 ,
GSM2388562 ,
GSM2388563 ,
GSM2388564 ,
GSM2388565 ,
GSM2388566 ,
GSM2388567 ,
GSM2388568 ,
GSM2388569 ,
GSM2388570 ,
GSM2388571 ,
GSM2388572 ,
GSM2388573 ,
GSM2388574 ,
GSM2388575 ,
GSM2388576 ,
GSM2388577 ,
GSM2388578 ,
GSM2388579 ,
GSM2388580 ,
GSM2388581 ,
GSM2388582 ,
GSM2388583 ,
GSM2388584 ,
GSM2388585 ,
GSM2388586 ,
GSM2388587 ,
GSM2388588 ,
GSM2388589 ,
GSM2388590 ,
GSM2388591 ,
GSM2388592 ,
GSM2388593 ,
GSM2388594 ,
GSM2388595 ,
GSM2388596 ,
GSM2388597 ,
GSM2388598 ,
GSM2388599 ,
GSM2388600 ,
GSM2388601 ,
GSM2388602 ,
GSM2388603 ,
GSM2388604 ,
GSM2388605 ,
GSM2388606 ,
GSM2388607 ,
GSM2388608 ,
GSM2388609 ,
GSM2388610 ,
GSM2388611 ,
GSM2388612 ,
GSM2388613 ,
GSM2388614 ,
GSM2388615 ,
GSM2388616 ,
GSM2388617 ,
GSM2388618 ,
GSM2388619 ,
GSM2388620 ,
GSM2388621 ,
GSM2388622 ,
GSM2388623 ,
GSM2388624 ,
GSM2388625 ,
GSM2388626 ,
GSM2388627 ,
GSM2388628 ,
GSM2388629 ,
GSM2388630 ,
GSM2388631 ,
GSM2388632 ,
GSM2388633 ,
GSM2388634 ,
GSM2388635 ,
GSM2388636 ,
GSM2388637 ,
GSM2388638 ,
GSM2388639 ,
GSM2388640 ,
GSM2388641 ,
GSM2388642 ,
GSM2388643 ,
GSM2388644 ,
GSM2388645 ,
GSM2388646 ,
GSM2388647 ,
GSM2388648 ,
GSM2388649 ,
GSM2388650 ,
GSM2388651 ,
GSM2388652 ,
GSM2388653 ,
GSM2388654 ,
GSM2388655 ,
GSM2476729 ,
GSM2476730 ,
GSM2476731 ,
GSM2476732 ,
GSM2476733 ,
GSM2476734 ,
GSM2476735 ,
GSM2476736 ,
GSM2476737 ,
GSM2476738 ,
GSM3557113 ,
GSM3557114 ,
GSM3557115 ,
GSM3557116 Series (9)
GSE70858 Cavin4/Murc is required for skeletal muscle development and function in zebrafish
GSE78945 Fast revascularization of the injured area is essential to support zebrafish heart regeneration
GSE80955 Phenotypically-anchored transcriptome profiling of developmental exposure to the antimicrobial agent, triclosan, reveals hepatotoxicity in embryonic zebrafish
GSE85770 Gene expression changes in asb2b mutant heart
GSE89117 Gene expression signature of WT siblings and hif1α mutants in normoxia and after hypoxia chamber incubation
GSE89780 Classifying chemical endocrine activity using transcriptome profiling in zebrafish
GSE94491 Atrial Molecular Asymmetry Precedes the Emergence of Cardiac Septation II
GSE94492 Atrial Molecular Asymmetry Precedes the Emergence of Cardiac Septation
GSE124849 Gene expression patterns of 52 hpf and 7 dpf zebrafish hearts
Data table header descriptions ID Agilent Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
ORF ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence
Data table ID SPOT_ID CONTROL_TYPE GENE_SYMBOL ORF ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE DRER00001
DRER00001
FALSE
slc35a5
slc35a5 ENSDART00000000004
chr9:35083371-35093143
solute carrier family 35, member A5 [Source:ZFIN;Acc:ZDB-GENE-030616-55]
AACTGTATACAAACCAGACCAGATGGAAAGCCTCACAGATAGTTCAGGACTCA
DRER00002
DRER00002
FALSE
ccdc80
ccdc80 ENSDART00000000005
chr9:35060460-35084513
coiled-coil domain containing 80 [Source:ZFIN;Acc:ZDB-GENE-030616-56]
TGGTTATCATCATCATGAGGGTTACCAGGAAGGTTATCATCAGGGTTATGGA
DRER00003
DRER00003
FALSE
nrf1
nrf1 ENSDART00000000019
chr4:14146777-14169064
nuclear respiratory factor 1 [Source:ZFIN;Acc:ZDB-GENE-001221-1]
ATTTTGGATGTTTTGTTACTGTTTCTTCCACCCGTGATCCACTCTGTCGAGT
DRER00004
DRER00004
FALSE
mcm6l
mcm6l ENSDART00000000042
chr2:50769976-50795733
MCM6 minichromosome maintenance deficient 6, like [Source:ZFIN;Acc:ZDB-GENE-050913-141]
CTCTGAGGATGATCCGTTTCTGGTTGTGAATCCCAATTATATACTGGAAGAC
DRER00005
DRER00005
FALSE
slc9a3r1
slc9a3r1 ENSDART00000000069
chr12:34979366-35032034
solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 [Source:ZFIN;Acc:ZDB-GENE-031006-7]
TTCGCTTCATTCCGTGAGACTTTAAGATGGTACATTTTTAACTCAAATACT
DRER00006
DRER00006
FALSE
dap
dap ENSDART00000000070
chr24:22678238-22711533
death associated protein [Source:ZFIN;Acc:ZDB-GENE-000511-3]
AATCAGAAACATTCTAATTCCATGGGTTCATTTCATGAGGGATTTGTGGA
DRER00007
DRER00007
FALSE
itsn1
itsn1 ENSDART00000000087
chr1:47492921-47586925
intersectin 1 (SH3 domain protein) [Source:ZFIN;Acc:ZDB-GENE-030616-226]
TTATCAATGTAGAAGCAGTGTGTTGTCTTAATGTTGCGATTAAAACTCAATT
DRER00008
DRER00008
FALSE
musk
musk ENSDART00000000102
chr10:13048113-13142776
muscle, skeletal, receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-030131-6458]
ATATCTTGAGAATTTCTGTAATCACCGGGTAATAATATACCACTTC
DRER00009
DRER00009
FALSE
thraa
thraa ENSDART00000000160
chr3:34773318-34838901
thyroid hormone receptor alpha a [Source:ZFIN;Acc:ZDB-GENE-990415-263]
GACGGTTCCTGCTTAAGGTGAACCTCGTTTCGGTCCCTCGCCTCCAAACCACAT
DRER00010
DRER00010
FALSE
ptpn4b
ptpn4b ENSDART00000000192
chr22:11889988-11943467
protein tyrosine phosphatase, non-receptor type 4, b [Source:ZFIN;Acc:ZDB-GENE-030131-6259]
ATTTCCCCCCTGTACAATGTTTTTGTGGTGCCATTGCGCAAACGATTTGGC
DRER00011
DRER00011
FALSE
sema6e
sema6e ENSDART00000000198
chr16:32470419-32621272
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E [Source:ZFIN;Acc:ZDB-GENE-040724-119]
CAACCAACGAAGCTCCCATCAGCCACTCTTGCTCTCCCGAATGAACTCT
DRER00012
DRER00012
FALSE
zgc:92533
zgc:92533 ENSDART00000000221
chr19:5986769-6004973
zgc:92533 [Source:ZFIN;Acc:ZDB-GENE-040801-181]
CTTCTGGACATCAAGACCAGACTGGAGATGGAGATTGCAGAGTACAGAAGA
DRER00013
DRER00013
FALSE
slc40a1
slc40a1 ENSDART00000000250
chr9:42176170-42186921
solute carrier family 40 (iron-regulated transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-000511-8]
ATTCTGTTCATGTTTGGTGGCATATTTGCAATAATTGTGGTTCACACT
DRER00014
DRER00014
FALSE
stat1b
stat1b ENSDART00000000280
chr9:42292016-42320232
signal transducer and activator of transcription 1b [Source:ZFIN;Acc:ZDB-GENE-030616-23]
CAGTCTAACAGAAATGAACAACATCCTACCTGCTACAGTCAAAGAAACTGGACAC
DRER00015
DRER00015
FALSE
triob
triob ENSDART00000000382
chr16:10070124-10325662
trio Rho guanine nucleotide exchange factor b [Source:ZFIN;Acc:ZDB-GENE-030616-399]
TCCTGGACGAAAGTGTGGAGGAGACCTGCCTCAACATCTGCCGCATTGACTTCA
DRER00016
DRER00016
FALSE
pde6a
pde6a ENSDART00000000392
chr14:26083459-26112198
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
AAGACCTGTGTCATTTCCTAGACGTCAAGCAGCACAAAAACACATCGTAAGAATG
DRER00017
DRER00017
FALSE
matr3l1.1
matr3l1.1 ENSDART00000000406
chr14:26157838-26178044
matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
AGTCTGCTTCCTGTTTTACTCCAATGAGGACACTGCTAAGAAGATTCACTGCA
DRER00018
DRER00018
FALSE
nitr1l
nitr1l ENSDART00000000473
chr7:18232392-18234201
novel immune-type receptor 1l [Source:ZFIN;Acc:ZDB-GENE-020225-7]
CTGGCATTTACTACTGTGCTGTGGCCACATGTGGAGAAATACTGATTGGAAG
DRER00019
DRER00019
FALSE
cntn2
cntn2 ENSDART00000000486
chr11:24880281-24902464
contactin 2 [Source:ZFIN;Acc:ZDB-GENE-990630-12]
TCAAGTGTCCTGGGAGCCCATTCAACACCTCAACATTAATGGAGTTCTTCGAGGTT
DRER00020
DRER00020
FALSE
tnni1a
tnni1a ENSDART00000000488
chr23:5772956-5779350
troponin I, skeletal, slow a [Source:ZFIN;Acc:ZDB-GENE-030616-266]
AAAGATCTAAACATTAAAGTTTTGGACCTGAGAGGTAAGTTCAAGCGGCCCCCGC
60078 12700 Kbytes .Supplementary data files not provided
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