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Platform GPL2070 Query DataSets for GPL2070
Status Public on Jun 29, 2005
Title Human tiling array using Nimblegen platform, set 19 of 38
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
 
Description High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16. There are a total of 38 arrays. This is set 19.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab
 
Web link http://www.nimblegen.com
Contributor(s) Kim TH, Barrera LO, Zhang M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B
Submission date May 17, 2005
Last update date Oct 27, 2010
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Samples (1) GSM51754
Series (1)
GSE2672 A high-resolution map of active promoters in the human genome

Data table header descriptions
ID
Probe ID probe id
Chromosome chromosome
Position position
SEQUENCE probe sequence
Comment comment

Data table
ID Probe ID Chromosome Position SEQUENCE Comment
1 CHR07P142851784 CHR7 142851784 TCAAAGGCAAAGAGCGATACCCCTAGGGATATTGTTAAAGAATCTAGATA SET19
2 CHR07P142853394 CHR7 142853394 GTGAGTAAACAACTACAATAATGAAAAACCCTGTTGAGATTTTGATTCTA SET19
3 CHR07P142854170 CHR7 142854170 CTACAGAGGCCTATGATATTTACTGAAATCAAAGAAATCCTTTTATTATT SET19
4 CHR07P142854270 CHR7 142854270 CTTGTAACCAGCTATAAAACTTTGGGTGATATTGGTCATCAGATTGAATA SET19
5 CHR07P142854370 CHR7 142854370 CAGAACTTATGGGAATATTTTTAGCAATATTTTTGTGGGGGACGATGATG SET19
6 CHR07P142854470 CHR7 142854470 ACATTGTACGGTCCTTGTCTTCATCTCTTACCATGCCTGTTTCTTCTCTC SET19
7 CHR07P142854570 CHR7 142854570 TTATCACCTCACCTTGTCCTGCTTTGTCACTACACTCTGGATCAAGGGCA SET19
8 CHR07P142854670 CHR7 142854670 TCCTGACTCTCCTCAAGATGGCACCCAAAGCACAGGCTCCAGCCTCTTCA SET19
9 CHR07P142854770 CHR7 142854770 AGCTTTAAAAAAACAGAAGGCAGGCTCCCCGTAAAAGATCTAGAGAGATG SET19
10 CHR07P142854870 CHR7 142854870 AAAGAACAAGAATGACCACAAGAAGTCTTGCAAGTCCAGAGGGAGCAGAT SET19
11 CHR07P142856272 CHR7 142856272 GTTTACAAGAGAAACCATTTGGATAGAATGTGATCCATAAGTCAGCCTGA SET19
12 CHR07P142856372 CHR7 142856372 GACTTTTAAGAAACTTATGTGTAAAAAAATGCATATTTTTCTTTTAAAGA SET19
13 CHR07P142856746 CHR7 142856746 CGAGATTGTTTTTAAATAGCAAAATATCTGGGATTTTCCCCCAGTAATGG SET19
14 CHR07P142856846 CHR7 142856846 AAAAGGCTTATTATTAATAATTCATAGTTCAAAACTTTCTATGGATGAAA SET19
15 CHR07P142856965 CHR7 142856965 TAACCAGAAAAGGGGGCATTTTTAGTTTTCTTTTTCTTTTTTGGCTGCTC SET19
16 CHR07P142857065 CHR7 142857065 CTTAATGGAAGATAGGCCCTTCCTATTTTTAGCCAGTGCACTAGCTAAAA SET19
17 CHR07P142857165 CHR7 142857165 TCAGTTCAAGTCCACGAGGCCATTGAATCTTCTGCAGATGACACTAGGAA SET19
18 CHR07P142857265 CHR7 142857265 CCATAGCAATAGCATTATAACCAATTCTGGTGGCGTAATTTTGACTGTAT SET19
19 CHR07P142857365 CHR7 142857365 TACTCTACCAATTATGAGAGCAATCCAAATCACATCTAATAAATTCCTAC SET19
20 CHR07P142857465 CHR7 142857465 CTGAGTGATACACCAGATAAAACACACCTGCGGTATCCTCAGGATAACCT SET19

Total number of rows: 389199

Table truncated, full table size 35663 Kbytes.




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Supplementary data files not provided
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