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Platform GPL2086 Query DataSets for GPL2086
Status Public on Jun 29, 2005
Title Human tiling array using Nimblegen platform, set 35 of 38
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
 
Description High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16. There are a total of 38 arrays. This is set 35.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab
 
Web link http://www.nimblegen.com/
Contributor(s) Kim TH, Barrera LO, Zhang M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B
Submission date May 17, 2005
Last update date Oct 27, 2010
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Samples (1) GSM51734
Series (1)
GSE2672 A high-resolution map of active promoters in the human genome

Data table header descriptions
ID
Probe ID probe id
Chromosome chromosome
Position position
SEQUENCE probe sequence
Comment comment

Data table
ID Probe ID Chromosome Position SEQUENCE Comment
1 CHR19P016115643 CHR19 16115643 AGAAGGAGGGACAGGGCTAGTGGGGCCTGGGGTGGCAGGAGGGATTTTCT SET35
2 CHR19P016115743 CHR19 16115743 AAATGGAAAATGGAGCTGGAGTTAGGGAAAAGGGGGTCTTGGCAAGACAA SET35
3 CHR19P016115843 CHR19 16115843 TTAGGTCTAGAATGTGGGTAGCGGGGAAGTAGAGGAGGCTCCCAGGCCAG SET35
4 CHR19P016115943 CHR19 16115943 TCACCAGCAAAGACCCTTGCACCCTCCTCTGTGCCAGGCCAGCACCAGGA SET35
5 CHR19P016116043 CHR19 16116043 GGAGGCCCTCAGGCTGGTGGAGACAGAGCAAGATAAAGACACTCTAGCTC SET35
6 CHR19P016116265 CHR19 16116265 CCTGTAAACATTACCCCATGATAGGTCACAACTGGATTCATGAATATTGT SET35
7 CHR19P016117322 CHR19 16117322 TCCAATTCCAGGCTCTTAATCATTTTGTCACCCTGCTTTATTAAACATTT SET35
8 CHR19P016117422 CHR19 16117422 CCCCAGAGGGTATGCTTGACATCTGGTTGGAGAAAGTCAATATTGACTGC SET35
9 CHR19P016117522 CHR19 16117522 CTTTTGAGATATTGAAACATTAGATGGGGCCAATGGGTGGAGGGAGTGAG SET35
10 CHR19P016117906 CHR19 16117906 TTAAGGGTGAGCAAGAGGGGTCCTGAAGGAACTATCTAGCAAGATACAAT SET35
11 CHR19P016118006 CHR19 16118006 CTTTCTCTCTCCAGCTCTGTCATTGGTACACAAAGTCCCATGGTACCGCT SET35
12 CHR19P016118106 CHR19 16118106 CGTAGGTGTGCCATGAGTGGCTACAACGTGTAGTGACGTTGGTGGCAGAA SET35
13 CHR19P016118516 CHR19 16118516 TCAGGGCAACCCTTTTTGACCACCACCGTTGGGTCAGCTGTTTATTTCGT SET35
14 CHR19P016118935 CHR19 16118935 CTAAATACTCTATTCTTAAATTTCAAAACATTTATTTATAAAATGAACTT SET35
15 CHR19P016119317 CHR19 16119317 CACAATGGCATAAGAAGAATAAAAGGAAAAGTCCTTGAAGGCCTTTGGGG SET35
16 CHR19P016120395 CHR19 16120395 ACAAGCCAGTTTTAAGTCCATTGCTCTGTCCACCCTGGAGGACTTCTCAA SET35
17 CHR19P016120495 CHR19 16120495 CAAGCTTGATTCTTGTCTTCCCTCCCTTCTCTACCCAGGTGACCTTCCCT SET35
18 CHR19P016120595 CHR19 16120595 CCCACGGCTGGACTGGTTTGTGCACACCCAGATGGGCCAGCTGGCCCAAG SET35
19 CHR19P016120695 CHR19 16120695 ACCCACACCCTCCACCCTGCCCTCCCCACCCTGTCCTTGTCTGTCCCTAC SET35
20 CHR19P016120917 CHR19 16120917 CCAACAGACCAGCACTGCCAGGGACCTGGCAGCACCCCACACCTCGCCCA SET35

Total number of rows: 389199

Table truncated, full table size 35965 Kbytes.




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Supplementary data files not provided
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