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Platform GPL2088 Query DataSets for GPL2088
Status Public on Jun 29, 2005
Title Human tiling array using Nimblegen platform, set 37 of 38
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
 
Description High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16. There are a total of 38 arrays. This is set 37.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab
 
Web link http://www.nimblegen.com/
Contributor(s) Kim TH, Barrera LO, Zhang M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B
Submission date May 17, 2005
Last update date Oct 27, 2010
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Samples (1) GSM51736
Series (1)
GSE2672 A high-resolution map of active promoters in the human genome

Data table header descriptions
ID
Probe ID probe id
Chromosome chromosome
Position position
SEQUENCE probe sequence
Comment comment

Data table
ID Probe ID Chromosome Position SEQUENCE Comment
1 CHR22P036816414 CHR22 36816414 TCCCATCCCCTCACACCCCATCAGCACCCACTGCTGCCCAGCACCCACAG SET37
2 CHR22P036816968 CHR22 36816968 GAGAAAGCTGAAAGAAGGTGGCTGAGCGAGGCTTGCTCAACAGGCTCTTA SET37
3 CHR22P036817068 CHR22 36817068 GCCAGAGCAAAACGTCCTTTCACAAAAGGAAAAAGCATCTCTTTCATTCA SET37
4 CHR22P036817168 CHR22 36817168 TGGAGCTCCCAAGCACATGAGACAGGGGTGACTTTAAGAGATCTTTGGGC SET37
5 CHR22P036818271 CHR22 36818271 ACATCAGAGAGGCAACAGGGGGCCAGGCATGTGCCATGAGAGGAGAGGCC SET37
6 CHR22P036819003 CHR22 36819003 TCCGAAAACGAGAAGAGGCATTTAAGACATGACCCTATCAAAATCCACTG SET37
7 CHR22P036819103 CHR22 36819103 GTTTGTAACACACTCTTCACTACGGCCCCTTACTCCTTGCCTACCTACTT SET37
8 CHR22P036819229 CHR22 36819229 GAGTATTTAAATTTCTCCTTTCTGTATCTCTTAGTGATGTCATTCTGCTG SET37
9 CHR22P036819329 CHR22 36819329 ATCCACGGAAGGAACAAGAAGTGTCCTAAACAGTAGCAAACCTTACACAT SET37
10 CHR22P036819429 CHR22 36819429 GTGTGACCTCAAGCAACTCATGCGCCCTCTTTTTCTCATGTGAAGTGAGA SET37
11 CHR22P036819529 CHR22 36819529 TATTTGTTAGATAAACGATGACTGAATGAATGGTGAAGAGAACATATACA SET37
12 CHR22P036819629 CHR22 36819629 CTGAAAGACAAGGGACCTCCTGCTCATCCTTCTCTCCTTGTCTTCTCATT SET37
13 CHR22P036819875 CHR22 36819875 AAAACAGGTTCCAAACTCCAGGCAGAAACTCTAACAAAAACAATGCATTC SET37
14 CHR22P036819975 CHR22 36819975 ACCTGCCTGACATCCTGTTGGGCGGGTAAGAGGCAGGTGAGGGAAAGACC SET37
15 CHR22P036820075 CHR22 36820075 AATACGGCCACAGGTCCCCTTGCCCTGTGCCCTCCCTGTCCCACACCCAC SET37
16 CHR22P036820175 CHR22 36820175 CACCAGCTTCCAAGTCATCTGTGGGAGCAGGAGGTGGACACAGGATTAGG SET37
17 CHR22P036820275 CHR22 36820275 GGGGCAGGTCTGGAGGCACGCGAGAGAGGAAAGGCAAGGAAAAAAAGCAG SET37
18 CHR22P036820375 CHR22 36820375 AAAGGTGGAGACGGACGTGAAGTGGGGAATCAAGTGAGCACTTAGAGGAG SET37
19 CHR22P036820475 CHR22 36820475 GTCGGGGAAAGAGAAGAGATGGATTGACTCGGGAAGTTAGGGATACTGAG SET37
20 CHR22P036820575 CHR22 36820575 CTGGGGTCCCTGGGGTCCACAAGTTCGAGATGAGACACGGGCGGTCTCGG SET37

Total number of rows: 389199

Table truncated, full table size 35343 Kbytes.




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