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Platform GPL20898 Query DataSets for GPL20898
Status Public on Oct 01, 2015
Title Agilent-035130 Human Fetal Chip V 2.0 [hg19]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Fetal Chip V 2.0

Arrays of this design have barcodes that begin with 16035130 or 2535130.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Sep 10, 2015
Last update date Oct 01, 2015
Contact name Zirui DONG
E-mail(s) elvisdong@link.cuhk.edu.hk
Organization name The Chinese University of Hong Kong
Department Dept. of Obstetrics and Gynaecology
Street address Shatin, N.T.
City Hong Kong
ZIP/Postal code 999077
Country China
 
Samples (6) GSM1874155, GSM1874157, GSM1874158, GSM1874159, GSM1874160, GSM1874161
Series (2)
GSE72891 aCGH for CNV detection in clinical samples
GSE73191 Chromosomal microarray data for validation of copy-number variants detection from a low-coverage whole-genome sequencing approach in clinical samples

Data table header descriptions
ID Agilent Probe Name
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
ORF ORF Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOME
RANGE_GB
RANGE_START
RANGE_END
CYTOBAND Cytoband
SPOT_ID
DESCRIPTION Description

Data table
ID CONTROL_TYPE GB_ACC ORF ACCESSION_STRING CHROMOSOMAL_LOCATION CHROMOSOME RANGE_GB RANGE_START RANGE_END CYTOBAND SPOT_ID DESCRIPTION
A_14_P100019 FALSE chr13:086740559-086740618 chr13 NC_000013.10 86740559 86740618 A_14_P100019
A_14_P100073 FALSE chr4:132086247-132086306 chr4 NC_000004.11 132086247 132086306 A_14_P100073
A_14_P100079 FALSE NM_032188 MYST1 ref|NM_032188|ref|NM_032188|ref|NM_182958 chr16:031140032-031140084 chr16 NC_000016.9 31140032 31140084 Homo sapiens MYST histone acetyltransferase 1 (MYST1), transcript variant 1, mRNA.
A_14_P100081 FALSE NM_000076 CDKN1C ref|NM_000076|ref|NM_000076|ref|NM_001122630|ref|NM_001122631 chr11:002904974-002905033 chr11 NC_000011.9 2904974 2905033 Homo sapiens cyclin-dependent kinase inhibitor 1C (p57, Kip2) (CDKN1C), transcript variant 1, mRNA.
A_14_P100090 FALSE NM_025140 CCDC92 ref|NM_025140|ref|NM_025140 chr12:124432938-124432997 chr12 NC_000012.11 124432938 124432997 Homo sapiens coiled-coil domain containing 92 (CCDC92), mRNA.
A_14_P100101 FALSE NM_002914 RFC2 ref|NM_002914|ref|NM_002914|ref|NM_181471 chr7:073663132-073663191 chr7 NC_000007.13 73663132 73663191 Homo sapiens replication factor C (activator 1) 2, 40kDa (RFC2), transcript variant 2, mRNA.
A_14_P100102 FALSE AK296298 gb|AK296298|gb|AK296298|gb|AK055150 chr1:059364652-059364711 chr1 NC_000001.10 59364652 59364711 Homo sapiens cDNA FLJ61764 complete cds.
A_14_P100119 FALSE chr9:076321602-076321661 chr9 NC_000009.11 76321602 76321661 A_14_P100119
A_14_P100132 FALSE NM_016483 PHF7 ref|NM_016483|ref|NM_016483|ref|NM_173341 chr3:052457616-052457675 chr3 NC_000003.11 52457616 52457675 Homo sapiens PHD finger protein 7 (PHF7), transcript variant 1, mRNA.
A_14_P100148 FALSE chrX:097139856-097139915 chrX NC_000023.10 97139856 97139915 A_14_P100148
A_14_P100149 FALSE chr21:028592949-028593008 chr21 NC_000021.8 28592949 28593008 A_14_P100149
A_14_P100175 FALSE NM_006576 AVIL ref|NM_006576|ref|NM_006576 chr12:058205712-058205771 chr12 NC_000012.11 58205712 58205771 Homo sapiens advillin (AVIL), mRNA.
A_14_P100185 FALSE NM_014175 MRPL15 ref|NM_014175|ref|NM_014175 chr8:055052672-055052731 chr8 NC_000008.10 55052672 55052731 Homo sapiens mitochondrial ribosomal protein L15 (MRPL15), nuclear gene encoding mitochondrial protein, mRNA.
A_14_P100217 FALSE chr5:130006441-130006500 chr5 NC_000005.9 130006441 130006500 A_14_P100217
A_14_P100233 FALSE chr2:211132739-211132798 chr2 NC_000002.11 211132739 211132798 A_14_P100233
A_14_P100241 FALSE NM_174975 SEC14L3 ref|NM_174975|ref|NM_174975 chr22:030859022-030859081 chr22 NC_000022.10 30859022 30859081 Homo sapiens SEC14-like 3 (S. cerevisiae) (SEC14L3), mRNA.
A_14_P100244 FALSE NM_016529 ATP8A2 ref|NM_016529|ref|NM_016529 chr13:026414943-026415002 chr13 NC_000013.10 26414943 26415002 Homo sapiens ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 (ATP8A2), mRNA.
A_14_P100266 FALSE chr8:122329490-122329549 chr8 NC_000008.10 122329490 122329549 A_14_P100266
A_14_P100273 FALSE chr2:139940074-139940133 chr2 NC_000002.11 139940074 139940133 A_14_P100273
A_14_P100304 FALSE NM_152411 ZNF786 ref|NM_152411|ref|NM_152411 chr7:148774870-148774925 chr7 NC_000007.13 148774870 148774925 Homo sapiens zinc finger protein 786 (ZNF786), mRNA.

Total number of rows: 61820

Table truncated, full table size 10015 Kbytes.




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Supplementary file Size Download File type/resource
GPL20898_Agilent-035130_GEO.txt.gz 2.7 Mb (ftp)(http) TXT

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