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Platform GPL2090 Query DataSets for GPL2090
Status Public on Jun 29, 2005
Title Human promoter regions using Nimblegen platform
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
 
Description High density oligonucleotide array of Nimblegen. A condensed array used to verify the results from genome scan arrays. It includes 9966 putative TAF1 bindinf sequences plus 29 control genomic loci, selected from the ENCODE regions, each ranging from 500 Kbp to 1.9Mbp at 100bp resolution.
Keywords = Nimblegen, human tiling array, LICR renlab
 
Web link http://www.nimblegen.com/
Contributor(s) Kim TH, Barrera LO, Zhang M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B
Submission date May 17, 2005
Last update date Oct 27, 2010
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Samples (8) GSM51795, GSM51796, GSM51797, GSM51798, GSM51799, GSM51800 
Series (1)
GSE2672 A high-resolution map of active promoters in the human genome

Data table header descriptions
ID
Probe ID probe id
Chromosome chromosome
Position position
SEQUENCE probe sequence
Comment comment

Data table
ID Probe ID Chromosome Position SEQUENCE Comment
1 BREN00P000000000 CHR10:100852980-100857380 100853001 AAAATCTGACGTTTTAAAAAGATGTATTTAGATTGACAGTAATACTAGTT REN_PROBES
2 BREN00P000000001 CHR10:100852980-100857380 100853101 TTAAATTAAGAGACCAAATGGTGTCCATTCAAATTCAATTTGAGGCAATC REN_PROBES
3 BREN00P000000002 CHR10:100852980-100857380 100853325 ATTACCCGCTTCAACAAACCATCACTTTTCAATGGATTTTTCCTTACCCC REN_PROBES
4 BREN00P000000003 CHR10:100852980-100857380 100853692 GACTTTTTTTTTTTTTTTTTAACAAATGCTATGCACAGACAAAACGTTAT REN_PROBES
5 BREN00P000000004 CHR10:100852980-100857380 100853792 ATGATTCCACCTTCTCTTTCCACAATTTCTAGTCCTTTTATTCTAAGTCT REN_PROBES
6 BREN00P000000005 CHR10:100852980-100857380 100853892 CTTTGCACGTGGCAAAATCCAAATGGAGAAAATAAGTGTCTGTGGGGCTT REN_PROBES
7 BREN00P000000006 CHR10:100852980-100857380 100854078 ACAGAAGAGAATCACTTGAATCAAGAAATGAAGATAGGATGTGTGGAAAG REN_PROBES
8 BREN00P000000007 CHR10:100852980-100857380 100854178 CATTCCTACCACATCTGTGACGGCCAGAACCATCTCCCCAGACCCCCCGG REN_PROBES
9 BREN00P000000008 CHR10:100852980-100857380 100854278 AATCCTTAAGGGCAAAATCAAGCCTCAGTCTCCCCCTACAAAGCTTAATA REN_PROBES
10 BREN00P000000009 CHR10:100852980-100857380 100854378 CAGAGCTTTCTAGCGTTAAAAGTTCTCCTTTACCCATTTCCTAGCAACCA REN_PROBES
11 BREN00P000000010 CHR10:100852980-100857380 100854633 CAGGTTTTAGGAAGCCTTCGTGGATCCAGCCTCCTCTCCGGCGCCGCCCT REN_PROBES
12 BREN00P000000011 CHR10:100852980-100857380 100854733 CTGGGTTGGGTCCGCTCCACTCCCCGAGCTGCTCACACTCCAGAGCACTA REN_PROBES
13 BREN00P000000012 CHR10:100852980-100857380 100854833 CTGAAGTCGGCAGTGAGCTTGAAGACCAGGACAGGCTGGGCCTGCGGAAC REN_PROBES
14 BREN00P000000013 CHR10:100852980-100857380 100854933 ATTTCACCCCACGCCCGGAGCTGGCAGGTCAGGTCTGGCCGTTGCGACTG REN_PROBES
15 BREN00P000000014 CHR10:100852980-100857380 100855033 AATGGTCGAGCCGCGTCCAAAGCTTGGCAACGCGATTAACCAATCGCCAG REN_PROBES
16 BREN00P000000015 CHR10:100852980-100857380 100855133 GAAAACAATTTATCGGCTGCCGAGAATGATGCAACCAATGCAATTTCCTC REN_PROBES
17 BREN00P000000016 CHR10:100852980-100857380 100855233 TCGCAGAGGCTGTTATTCCTTGGGTCTCCCGGCTGAGGGGAGGAGCCGAG REN_PROBES
18 BREN00P000000017 CHR10:100852980-100857380 100855333 AGGATACGGGGAGGTGGCCGGAGGGAGTTCCCGAACACAGGTCTTCCTGT REN_PROBES
19 BREN00P000000018 CHR10:100852980-100857380 100855433 CTGGCAGCCAAATACCCAGCGTCTGTGCTCGGGACGGGAGTGTTCGTCCA REN_PROBES
20 BREN00P000000019 CHR10:100852980-100857380 100855533 CTGTTTCCCCCTGAGGGAAGTATACCTGTCCTGCCAGCCTTGGTCTCTGG REN_PROBES

Total number of rows: 390215

Table truncated, full table size 44633 Kbytes.




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Supplementary data files not provided
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