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Status
Public on Dec 31, 2005
Title
GeneXp BioGrid_poplar maturation
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Populus
Description
Single channel oligonucletide array for comparing gene expression among 16 tissue types to explore maturation and flowering in poplar
Contributor(s)
Li J , Shevchenko O , Strauss SH , Brunner AM Submission date
May 17, 2005
Last update date
Dec 31, 2005
Contact name
Jingyi Li
E-mail(s)
JINGYI.LI@OREGONSTATE.EDU Phone
541-737-8496
Organization name
Oregon State University
Street address
City
Corvallis
State/province
OR
ZIP/Postal code
97331
Country
USA
Samples (74)
GSM77557 , GSM77558 , GSM77559 , GSM77560 , GSM77561 , GSM77562
GSM77563 ,
GSM77564 ,
GSM77565 ,
GSM77566 ,
GSM77567 ,
GSM77568 ,
GSM77569 ,
GSM77570 ,
GSM77571 ,
GSM77572 ,
GSM77573 ,
GSM77574 ,
GSM77575 ,
GSM77576 ,
GSM77577 ,
GSM77578 ,
GSM77579 ,
GSM77580 ,
GSM77581 ,
GSM77582 ,
GSM77583 ,
GSM77584 ,
GSM77585 ,
GSM77586 ,
GSM77587 ,
GSM77588 ,
GSM77589 ,
GSM77590 ,
GSM77591 ,
GSM77592 ,
GSM77593 ,
GSM77594 ,
GSM77595 ,
GSM77596 ,
GSM77597 ,
GSM77598 ,
GSM77599 ,
GSM77600 ,
GSM77601 ,
GSM77602 ,
GSM77603 ,
GSM77604 ,
GSM77605 ,
GSM77606 ,
GSM77607 ,
GSM77608 ,
GSM77609 ,
GSM77610 ,
GSM77611 ,
GSM77612 ,
GSM77613 ,
GSM77614 ,
GSM77615 ,
GSM77616 ,
GSM77617 ,
GSM77618 ,
GSM77619 ,
GSM77620 ,
GSM77621 ,
GSM77622 ,
GSM77623 ,
GSM77624 ,
GSM77625 ,
GSM77626 ,
GSM77627 ,
GSM77628 ,
GSM77629 ,
GSM77630 Series (1)
GSE3457 Poplar flowering and maturation GeneXp arrays
Data table header descriptions ID
GB_ACC Gene bank accession number
SPOT_ID
Function/Family gene functions and family
ORGANISM sequence sources
SEQUENCE oligo sequence used
Data table ID GB_ACC SPOT_ID Function/Family ORGANISM SEQUENCE A001P54Um
AI161490
TF, MADS-box
P. tremula x P. tremuloides
CATGGGTTATGTTTAGATTGTAAGCAATGATTGGTTACATAATCATGTGTGTTGCATAAGTAACAAACTT
A003P34U
AI161604
TF, Homeodomain(Knox class)
P. tremula x P. tremuloides
CATTAATCAAAGGAAGCGACATTGGAAACCATCTGAAGATATGCAATTCATGGTGATGGATGGCCTTCAT
A009P50U
AI161918
TF, NAC(no apical meristem)
P. tremula x P. tremuloides
AGAGCCCCAATGGGCAGAAAACTGACTGGATCATGCATGAATACCGGCTTGAATCCGATGAGATGGTCCT
A010P29U
AI161962
TF, MADS-box
P. tremula x P. tremuloides
ACCAAGACGCCACAAATATTACAAGACCGGCAAATTATCGAGGTGGAGACAGAATTGTTCATAGGTCCAC
A031P05U
AI163047
Transcriptional regulation, SNF2 subfamily
P. tremula x P. tremuloides
GTCATATATGATCCTGATCCGAATCCTAAGAATGAGGAACAGGCAGTTGCTAGAGCCCACCGGATTGGCA
A039P68U
AI163321
TF, flowering protein CONSTANS
P. tremula x P. tremuloides
AGAAAATTCGATATACTGTCCGTAAAGAGGTAGCACTTAGAATGCAACGGAATAAAGGGCAGTTCACCTC
A047P36U
AI163743
Polycomb transcriptional repressor
P. tremula x P. tremuloides
TTATTTATGATCAAACTGTGGAATCACGGACTACTTGATGCACGGACGATGAACATGTGTAATATGATTC
A069P31U
AI164824
TF, MADS-box
P. tremula x P. tremuloides
AGGAGTTGAACAATACCATTGTGTGATGAGTTAAAATATCTGTTGGAAGATTACTGTACCATATTGTAAT
AF240445
AF240445
Ubiquitin
P. tremula x P. tremuloides
AGGCTTAGGGGAGGAACTATGATCAAGGTGAAGACTCTCACTGGAAAAGAAATTGAAATTGACATTGAAC
B014P39U(UB21CPA06)
BU821251
curlyleaf-like 1 homeotic protein; polycomb; set domain
P. tremula
TGCTGGACGCGAATGTGACCCAGATGTTTGTAGGAATTGCTGGGTTAGTTGCGGAGATGGCTCATTAGGA
B016P21Um
TF, MADS-box
TF, MADS-box
P. tremula
CCAGTAGAATCTTGCGAGGAACAGATCTGCTATCGCTGGAAGATCGACTTATCCCTTGAGATACTGGTAT
B020P33U
Post-transc. regulation/ RNA-binding, C3H zincfinger
Post-transc. regulation/ RNA-binding, C3H zincfinger
P. tremula
TATCAAACTATTGACTCCAGATTGTCTATGCTGGGAGTGGGACCGACCTTCTACCCTCAACGACCTGGAC
C025P36U
BI068662
Putative signal transduction, DENN domain, WD-40 repeat
P. tremula x P. tremuloides
CAGATCACAAGCTTTAGGGACACAAATGGATTCGGCAATAGAATGGTGGAGACCACTGATCTGGAGTGAT
C025P42U
BI068668
Transcriptional regulation, putative helicase
P. tremula x P. tremuloides
AAACCAGCTATTCCTGACCTGCCACCCACTGTATCAGCAATAGCTCAATCAGTTCGTGTGCTATATGGAG
C036P25U
BI069375
TF, salt-tolerance protein, CO
P. tremula x P. tremuloides
AAGACAGAGCCCTCTTTTGCCAGGATTGTGATGAACCAATCCATTCAGCTGGTAACCTTTCTGCGAATCA
C054P45U
BI071264
transcriptional. regulation, peroxiredoxin
P. tremula x P. tremuloides
AATCAGCTTCATTACATTGTGAGCGCGAGGAACAGATAGGAAGATGGGGTCCACAGACTGTCGGACCTAC
C061P33U
BI071641
Post-translational regulation, F-box protein
P. tremula x P. tremuloides
TATTGATGTTTGGGGGTTTGCTAAGAGAGGCCCCTTCGTTCCGCTCCAGCGATGTGTTACCATGGATCTA
C067P63U
BI072011
TF, GIA/RGA-like gibberellin response modulator
P. tremula x P. tremuloides
TCAGTGGAGAACTCGGTCGATTCGCTGGTTTGACCGGTTCATCTAGGGCGAATGCCTTAAACAAGCTACA
C092P78U
BI073104
reduced vernalization response 1
P. tremula x P. tremuloides
ATGGGAAACAGTGGCCTGTTCGATGCCTTTACAGGGGAGGCAGAGCTAAATTTAGTCAGGGATGGTATGA
F003P03Y
BI119647
TF, MYB
P. trichocarpa
ATGAAGAGGACCTCATTATCAAGCTACATGCCCTCCTTGGAAATAGGTGGTCATTGATAGCAGGAAGATT
240 32 Kbytes .Supplementary data files not provided
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