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Status
Public on May 31, 2016
Title
Agilent-049626 Horse miRNA
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Equus caballus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16049626 or 2549626. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Oct 06, 2015
Last update date
May 31, 2016
Contact name
Tomasz Sadkowski
E-mail(s)
tomasz_sadkowski@sggw.pl
Phone
+48225936263
Fax
+48228472452
URL
http://sadkowski.info
Organization name
Warsaw University of Life Sciences - SGGW
Department
Department of Physiological Sciences
Street address
Nowoursynowska 159
City
Warsaw
ZIP/Postal code
02-776
Country
Poland
Samples (32)
GSM1902582 , GSM1902583 , GSM1902584 , GSM1902585 , GSM1902586 , GSM1902587
GSM1902588 ,
GSM1902589 ,
GSM1902590 ,
GSM1902591 ,
GSM1902592 ,
GSM1902593 ,
GSM1902594 ,
GSM1902595 ,
GSM1902596 ,
GSM1902597 ,
GSM3474977 ,
GSM3474978 ,
GSM3474979 ,
GSM3474980 ,
GSM3474981 ,
GSM3474982 ,
GSM3474983 ,
GSM3474984 ,
GSM3474985 ,
GSM3474986 ,
GSM3474987 ,
GSM3474988 ,
GSM3474989 ,
GSM3474990 ,
GSM3474991 ,
GSM3474992
Series (2)
GSE73779
MicroRNA expression data from β-hydroxy-β-methylbutyrate (HMB) pre-incubated differentiating equine satellite cells (ESC) exposed to hydrogen peroxide
GSE122580
MicroRNA expression data from gamma-oryzanol (GO) pre-incubated differentiating equine satellite cells exposed to hydrogen peroxide
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
miRNA_ID
Gene Symbol
GENE_NAME
Gene Name
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
Data table
ID
COL
ROW
SPOT_ID
CONTROL_TYPE
miRNA_ID
GENE_NAME
ACCESSION_STRING
CHROMOSOMAL_LOCATION
1
96
164
miRNABrightCorner30
pos
2
96
162
DarkCorner
pos
3
96
160
A_38_P00019314
FALSE
eca-miR-211
eca-miR-211
mir|eca-miR-211|mir|MIMAT0012901|mir|eca-miR-204a_v14.0|mir|MIMAT0012898
chr1:108264819-108264800
4
96
158
A_38_P00019138
FALSE
eca-miR-1282
eca-miR-1282
mir|eca-miR-1282|mir|MIMAT0012889
unmapped
5
96
156
A_38_P00019814
FALSE
eca-miR-1842
eca-miR-1842
mir|eca-miR-1842|mir|MIMAT0013055
unmapped
6
96
154
NA
ignore
7
96
152
A_38_P00019794
FALSE
eca-miR-542-5p
eca-miR-542-5p
mir|eca-miR-542-5p|mir|MIMAT0013237
unmapped
8
96
150
A_38_P00019859
FALSE
eca-miR-424
eca-miR-424
mir|eca-miR-424|mir|MIMAT0013217|mir|eca-miR-322_v14.0|mir|MIMAT0013207
chrX:106955007-106954991
9
96
148
A_38_P00019748
FALSE
eca-miR-216b
eca-miR-216b
mir|eca-miR-216b|mir|MIMAT0013073
unmapped
10
96
146
A_38_P00019823
FALSE
eca-miR-188-3p
eca-miR-188-3p
mir|eca-miR-188-3p|mir|MIMAT0013199
unmapped
11
96
144
A_38_P00019703
FALSE
eca-miR-215
eca-miR-215
mir|eca-miR-215|mir|MIMAT0013190
unmapped
12
96
142
A_38_P00019773
FALSE
eca-miR-194
eca-miR-194
mir|eca-miR-194|mir|MIMAT0013050
unmapped
13
96
140
A_38_P00019292
FALSE
eca-miR-146b-5p
eca-miR-146b-5p
mir|eca-miR-146b-5p|mir|MIMAT0012891
unmapped
14
96
138
A_38_P00019096
FALSE
eca-miR-1185
eca-miR-1185
mir|eca-miR-1185|mir|MIMAT0013123
unmapped
15
96
136
A_38_P00019612
FALSE
eca-miR-615-5p
eca-miR-615-5p
mir|eca-miR-615-5p|mir|MIMAT0012976
unmapped
16
96
134
A_38_P00019419
FALSE
eca-miR-767-5p
eca-miR-767-5p
mir|eca-miR-767-5p|mir|MIMAT0013245
unmapped
17
96
132
A_38_P00019304
FALSE
eca-miR-505
eca-miR-505
mir|eca-miR-505|mir|MIMAT0013229
unmapped
18
96
130
A_38_P00019222
FALSE
eca-miR-155
eca-miR-155
mir|eca-miR-155|mir|MIMAT0013182
unmapped
19
96
128
A_38_P00019145
FALSE
eca-miR-1902
eca-miR-1902
mir|eca-miR-1902|mir|MIMAT0013048
unmapped
20
96
126
A_38_P00019705
FALSE
eca-miR-568
eca-miR-568
mir|eca-miR-568|mir|MIMAT0013095
unmapped
Total number of rows: 15744 Table truncated, full table size 1502 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL20990_049626_D_GEO_20141006.txt.gz
227.1 Kb
(ftp) (http)
TXT
GPL20990_049626_D_SequenceList_20141006.txt.gz
6.1 Kb
(ftp) (http)
TXT