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Platform GPL20990 Query DataSets for GPL20990
Status Public on May 31, 2016
Title Agilent-049626 Horse miRNA
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Equus caballus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16049626 or 2549626.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 06, 2015
Last update date May 31, 2016
Contact name Tomasz Sadkowski
E-mail(s) tomasz_sadkowski@sggw.pl
Phone +48225936263
Fax +48228472452
URL http://sadkowski.info
Organization name Warsaw University of Life Sciences - SGGW
Department Department of Physiological Sciences
Street address Nowoursynowska 159
City Warsaw
ZIP/Postal code 02-776
Country Poland
 
Samples (32) GSM1902582, GSM1902583, GSM1902584, GSM1902585, GSM1902586, GSM1902587 
Series (2)
GSE73779 MicroRNA expression data from β-hydroxy-β-methylbutyrate (HMB) pre-incubated differentiating equine satellite cells (ESC) exposed to hydrogen peroxide
GSE122580 MicroRNA expression data from gamma-oryzanol (GO) pre-incubated differentiating equine satellite cells exposed to hydrogen peroxide

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
miRNA_ID Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location

Data table
ID COL ROW SPOT_ID CONTROL_TYPE miRNA_ID GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION
1 96 164 miRNABrightCorner30 pos
2 96 162 DarkCorner pos
3 96 160 A_38_P00019314 FALSE eca-miR-211 eca-miR-211 mir|eca-miR-211|mir|MIMAT0012901|mir|eca-miR-204a_v14.0|mir|MIMAT0012898 chr1:108264819-108264800
4 96 158 A_38_P00019138 FALSE eca-miR-1282 eca-miR-1282 mir|eca-miR-1282|mir|MIMAT0012889 unmapped
5 96 156 A_38_P00019814 FALSE eca-miR-1842 eca-miR-1842 mir|eca-miR-1842|mir|MIMAT0013055 unmapped
6 96 154 NA ignore
7 96 152 A_38_P00019794 FALSE eca-miR-542-5p eca-miR-542-5p mir|eca-miR-542-5p|mir|MIMAT0013237 unmapped
8 96 150 A_38_P00019859 FALSE eca-miR-424 eca-miR-424 mir|eca-miR-424|mir|MIMAT0013217|mir|eca-miR-322_v14.0|mir|MIMAT0013207 chrX:106955007-106954991
9 96 148 A_38_P00019748 FALSE eca-miR-216b eca-miR-216b mir|eca-miR-216b|mir|MIMAT0013073 unmapped
10 96 146 A_38_P00019823 FALSE eca-miR-188-3p eca-miR-188-3p mir|eca-miR-188-3p|mir|MIMAT0013199 unmapped
11 96 144 A_38_P00019703 FALSE eca-miR-215 eca-miR-215 mir|eca-miR-215|mir|MIMAT0013190 unmapped
12 96 142 A_38_P00019773 FALSE eca-miR-194 eca-miR-194 mir|eca-miR-194|mir|MIMAT0013050 unmapped
13 96 140 A_38_P00019292 FALSE eca-miR-146b-5p eca-miR-146b-5p mir|eca-miR-146b-5p|mir|MIMAT0012891 unmapped
14 96 138 A_38_P00019096 FALSE eca-miR-1185 eca-miR-1185 mir|eca-miR-1185|mir|MIMAT0013123 unmapped
15 96 136 A_38_P00019612 FALSE eca-miR-615-5p eca-miR-615-5p mir|eca-miR-615-5p|mir|MIMAT0012976 unmapped
16 96 134 A_38_P00019419 FALSE eca-miR-767-5p eca-miR-767-5p mir|eca-miR-767-5p|mir|MIMAT0013245 unmapped
17 96 132 A_38_P00019304 FALSE eca-miR-505 eca-miR-505 mir|eca-miR-505|mir|MIMAT0013229 unmapped
18 96 130 A_38_P00019222 FALSE eca-miR-155 eca-miR-155 mir|eca-miR-155|mir|MIMAT0013182 unmapped
19 96 128 A_38_P00019145 FALSE eca-miR-1902 eca-miR-1902 mir|eca-miR-1902|mir|MIMAT0013048 unmapped
20 96 126 A_38_P00019705 FALSE eca-miR-568 eca-miR-568 mir|eca-miR-568|mir|MIMAT0013095 unmapped

Total number of rows: 15744

Table truncated, full table size 1502 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL20990_049626_D_GEO_20141006.txt.gz 227.1 Kb (ftp)(http) TXT
GPL20990_049626_D_SequenceList_20141006.txt.gz 6.1 Kb (ftp)(http) TXT

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