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Platform GPL21019 Query DataSets for GPL21019
Status Public on Nov 30, 2015
Title Agilent-032837 Homo sapiens 2q13_Pengfei
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16032837 or 2532837.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

chromosome 2q13
coordinates from hg19
chromosome 2q15
 
Submission date Oct 13, 2015
Last update date Nov 30, 2015
Contact name Bo Yuan
E-mail(s) yuanbo1007@gmail.com
Organization name Baylor College of Medicine
Street address One Baylor Plaza
City Houston
ZIP/Postal code 77030
Country USA
 
Samples (32) GSM1906780, GSM1906781, GSM1906782, GSM1906783, GSM1906784, GSM1906785 
Series (1)
GSE73962 Comparative genomic analyses of the human NPHP1 locus reveal complex genomic architecture and its regional evolution in primates

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION
1 192 328 HsCGHBrightCorner pos
2 192 326 DarkCorner pos
3 192 324 DarkCorner pos
4 192 322 A_16_P15778774 FALSE NM_001099289 SH3RF3 SH3 domain containing ring finger 3 ref|NM_001099289 chr2:110080341-110080394 hs|q12.3 "Homo sapiens SH3 domain containing ring finger 3 (SH3RF3), mRNA."
5 192 320 A_18_P21802609 FALSE chr2:113099397-113099456 hs|q13
6 192 318 A_16_P57952305 FALSE NM_001142808 ACOXL acyl-Coenzyme A oxidase-like ref|NM_001142808|ref|NM_001105516|ref|NM_001142807 chr2:111495578-111495622 hs|q13 "Homo sapiens acyl-Coenzyme A oxidase-like (ACOXL), transcript variant 3, mRNA."
7 192 316 A_16_P35723098 FALSE chr2:70667748-70667807 hs|p13.3
8 192 314 A_16_P15954979 FALSE NM_005019 PDE1A "phosphodiesterase 1A, calmodulin-dependent" ref|NM_005019|ref|NM_001003683 chr2:183095600-183095659 hs|q32.1 "Homo sapiens phosphodiesterase 1A, calmodulin-dependent (PDE1A), transcript variant 1, mRNA."
9 192 312 A_16_P57950066 FALSE chr2:109713928-109713987 hs|q12.3
10 192 310 A_16_P00398184 FALSE NM_001007231 ARHGAP25 Rho GTPase activating protein 25 ref|NM_001007231|ref|NM_001166277 chr2:68976072-68976131 hs|p13.3 "Homo sapiens Rho GTPase activating protein 25 (ARHGAP25), transcript variant 1, mRNA."
11 192 308 A_16_P00527908 FALSE NM_012290 TLK1 tousled-like kinase 1 ref|NM_012290|ref|NM_001136554 chr2:172010329-172010388 hs|q31.1 "Homo sapiens tousled-like kinase 1 (TLK1), transcript variant 1, mRNA."
12 192 306 A_16_P36132261 FALSE chr2:240365325-240365384 hs|q37.3
13 192 304 A_16_P15811040 FALSE chr2:124062038-124062097 hs|q14.3
14 192 302 CUST_1452_PI426242853 FALSE chr2:110489536-110862107 chr2:110827715-110827774
15 192 300 CUST_472_PI426242855 FALSE chr2:112477294-112640268 chr2:112485393-112485452
16 192 298 A_16_P57953180 FALSE ens|ENST00000439362 chr2:111974840-111974884 hs|q13
17 192 296 A_16_P15680920 FALSE chr2:63985169-63985228 hs|p15
18 192 294 A_16_P00406975 FALSE NM_001058 TACR1 tachykinin receptor 1 ref|NM_001058|ref|NM_015727 chr2:75392239-75392298 hs|p12 "Homo sapiens tachykinin receptor 1 (TACR1), transcript variant long, mRNA."
19 192 292 A_16_P15588830 FALSE NM_021907 DTNB "dystrobrevin, beta" ref|NM_021907|ref|NM_033147|ref|NM_033148|ref|NM_183360|ref|NM_183361 chr2:25608152-25608211 hs|p23.3 "Homo sapiens dystrobrevin, beta (DTNB), transcript variant 1, mRNA."
20 192 290 A_16_P00525993 FALSE NM_003142 SSB Sjogren syndrome antigen B (autoantigen La) ref|NM_003142 chr2:170656179-170656238 hs|q31.1 "Homo sapiens Sjogren syndrome antigen B (autoantigen La) (SSB), mRNA."

Total number of rows: 62976

Table truncated, full table size 8654 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL21019_2q13_60K_032837_D_GEO_20110302.txt.gz 2.1 Mb (ftp)(http) TXT

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