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Status
Public on Nov 30, 2015
Title
Agilent-032837 Homo sapiens 2q13_Pengfei
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16032837 or 2532837. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. chromosome 2q13 coordinates from hg19 chromosome 2q15
Submission date
Oct 13, 2015
Last update date
Nov 30, 2015
Contact name
Bo Yuan
E-mail(s)
yuanbo1007@gmail.com
Organization name
Baylor College of Medicine
Street address
One Baylor Plaza
City
Houston
ZIP/Postal code
77030
Country
USA
Samples (32)
GSM1906780 , GSM1906781 , GSM1906782 , GSM1906783 , GSM1906784 , GSM1906785
GSM1906786 ,
GSM1906787 ,
GSM1906788 ,
GSM1906789 ,
GSM1906790 ,
GSM1906791 ,
GSM1906792 ,
GSM1906793 ,
GSM1906794 ,
GSM1906795 ,
GSM1906796 ,
GSM1906797 ,
GSM1906798 ,
GSM1906799 ,
GSM1906800 ,
GSM1906801 ,
GSM1906802 ,
GSM1906803 ,
GSM1906804 ,
GSM1906805 ,
GSM1906806 ,
GSM1906807 ,
GSM1906808 ,
GSM1906809 ,
GSM1906810 ,
GSM1906811
Series (1)
GSE73962
Comparative genomic analyses of the human NPHP1 locus reveal complex genomic architecture and its regional evolution in primates
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
GB_ACC
GenBankAccession
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
CYTOBAND
Cytoband
DESCRIPTION
Description
Data table
ID
COL
ROW
SPOT_ID
CONTROL_TYPE
GB_ACC
GENE_SYMBOL
GENE_NAME
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
1
192
328
HsCGHBrightCorner
pos
2
192
326
DarkCorner
pos
3
192
324
DarkCorner
pos
4
192
322
A_16_P15778774
FALSE
NM_001099289
SH3RF3
SH3 domain containing ring finger 3
ref|NM_001099289
chr2:110080341-110080394
hs|q12.3
"Homo sapiens SH3 domain containing ring finger 3 (SH3RF3), mRNA."
5
192
320
A_18_P21802609
FALSE
chr2:113099397-113099456
hs|q13
6
192
318
A_16_P57952305
FALSE
NM_001142808
ACOXL
acyl-Coenzyme A oxidase-like
ref|NM_001142808|ref|NM_001105516|ref|NM_001142807
chr2:111495578-111495622
hs|q13
"Homo sapiens acyl-Coenzyme A oxidase-like (ACOXL), transcript variant 3, mRNA."
7
192
316
A_16_P35723098
FALSE
chr2:70667748-70667807
hs|p13.3
8
192
314
A_16_P15954979
FALSE
NM_005019
PDE1A
"phosphodiesterase 1A, calmodulin-dependent"
ref|NM_005019|ref|NM_001003683
chr2:183095600-183095659
hs|q32.1
"Homo sapiens phosphodiesterase 1A, calmodulin-dependent (PDE1A), transcript variant 1, mRNA."
9
192
312
A_16_P57950066
FALSE
chr2:109713928-109713987
hs|q12.3
10
192
310
A_16_P00398184
FALSE
NM_001007231
ARHGAP25
Rho GTPase activating protein 25
ref|NM_001007231|ref|NM_001166277
chr2:68976072-68976131
hs|p13.3
"Homo sapiens Rho GTPase activating protein 25 (ARHGAP25), transcript variant 1, mRNA."
11
192
308
A_16_P00527908
FALSE
NM_012290
TLK1
tousled-like kinase 1
ref|NM_012290|ref|NM_001136554
chr2:172010329-172010388
hs|q31.1
"Homo sapiens tousled-like kinase 1 (TLK1), transcript variant 1, mRNA."
12
192
306
A_16_P36132261
FALSE
chr2:240365325-240365384
hs|q37.3
13
192
304
A_16_P15811040
FALSE
chr2:124062038-124062097
hs|q14.3
14
192
302
CUST_1452_PI426242853
FALSE
chr2:110489536-110862107
chr2:110827715-110827774
15
192
300
CUST_472_PI426242855
FALSE
chr2:112477294-112640268
chr2:112485393-112485452
16
192
298
A_16_P57953180
FALSE
ens|ENST00000439362
chr2:111974840-111974884
hs|q13
17
192
296
A_16_P15680920
FALSE
chr2:63985169-63985228
hs|p15
18
192
294
A_16_P00406975
FALSE
NM_001058
TACR1
tachykinin receptor 1
ref|NM_001058|ref|NM_015727
chr2:75392239-75392298
hs|p12
"Homo sapiens tachykinin receptor 1 (TACR1), transcript variant long, mRNA."
19
192
292
A_16_P15588830
FALSE
NM_021907
DTNB
"dystrobrevin, beta"
ref|NM_021907|ref|NM_033147|ref|NM_033148|ref|NM_183360|ref|NM_183361
chr2:25608152-25608211
hs|p23.3
"Homo sapiens dystrobrevin, beta (DTNB), transcript variant 1, mRNA."
20
192
290
A_16_P00525993
FALSE
NM_003142
SSB
Sjogren syndrome antigen B (autoantigen La)
ref|NM_003142
chr2:170656179-170656238
hs|q31.1
"Homo sapiens Sjogren syndrome antigen B (autoantigen La) (SSB), mRNA."
Total number of rows: 62976 Table truncated, full table size 8654 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL21019_2q13_60K_032837_D_GEO_20110302.txt.gz
2.1 Mb
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