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Platform GPL21041 Query DataSets for GPL21041
Status Public on Oct 17, 2015
Title Agilent-062494 Genotypic Zea mays 4x180K GE ArrayDesign
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Zea mays
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Zea mays

Arrays of this design have barcodes that begin with 16062494 or 2562494.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 16, 2015
Last update date Oct 17, 2015
Contact name Ovidiu Balacescu
E-mail(s) obalacescu@yahoo.com
Phone 0040 264 590 638
Organization name The Oncology Institute “Prof Dr. Ion Chiricuta”,
Department Functional Genomics, Proteomics and Experimental Pathology
Street address 34-36 Republicii
City Cluj-Napoca
State/province Cluj
ZIP/Postal code 400015
Country Romania
 
Samples (33) GSM1909845, GSM1909846, GSM1909847, GSM1909848, GSM1909849, GSM1909850 
Series (2)
GSE74096 Maize cytolines provide key nuclear genes that are under the control of retrograde signaling pathways in plants
GSE171670 Cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
1 532 340 GE_BrightCorner GE_BrightCorner pos
2 532 338 DarkCorner DarkCorner pos
3 532 336 DarkCorner DarkCorner pos
4 532 334 DarkCorner DarkCorner pos
5 532 332 DarkCorner DarkCorner pos
6 532 330 DarkCorner DarkCorner pos
7 532 328 DarkCorner DarkCorner pos
8 532 326 DarkCorner DarkCorner pos
9 532 324 DarkCorner DarkCorner pos
10 532 322 DarkCorner DarkCorner pos
11 532 320 DarkCorner DarkCorner pos
12 532 318 DarkCorner DarkCorner pos
13 532 316 DarkCorner DarkCorner pos
14 532 314 DarkCorner DarkCorner pos
15 532 312 DarkCorner DarkCorner pos
16 532 310 DarkCorner DarkCorner pos
17 532 308 DarkCorner DarkCorner pos
18 532 306 DarkCorner DarkCorner pos
19 532 304 DarkCorner DarkCorner pos
20 532 302 DarkCorner DarkCorner pos

Total number of rows: 180880

Table truncated, full table size 44271 Kbytes.




Download family Format
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Supplementary data files not provided
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