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Status
Public on Oct 23, 2015
Title
Agilent-049158 Salmon Oligo Microarray 8x60K v1 020938
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Salmo salar Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
8x60K version of 4x40K predefined Salmon array (ID:020938). Also includes probe group "additional probes" (PGRID:61429)
Submission date
Oct 23, 2015
Last update date
Oct 23, 2015
Contact name
Silvia Rueberg
E-mail(s)
silvia@miltenyibiotec.de Organization name
Miltenyi Biotec GmbH
Department
Genomic Services
Street address
Friedrich-Ebert-Str. 68
City
Bergisch Gladbach
ZIP/Postal code
51429
Country
Germany
Samples (140)
GSM1917394 , GSM1917395 , GSM1917396 , GSM1917397 , GSM1917398 , GSM1917399
GSM1917400 ,
GSM1917401 ,
GSM1917402 ,
GSM1917403 ,
GSM1917404 ,
GSM1917405 ,
GSM1917406 ,
GSM1917407 ,
GSM1917408 ,
GSM1917409 ,
GSM1917410 ,
GSM1917411 ,
GSM1917412 ,
GSM1917413 ,
GSM1917414 ,
GSM1917415 ,
GSM1917416 ,
GSM1917417 ,
GSM1917418 ,
GSM1917419 ,
GSM1917420 ,
GSM1917421 ,
GSM1958996 ,
GSM1958997 ,
GSM1958998 ,
GSM1958999 ,
GSM1959000 ,
GSM1959001 ,
GSM1959002 ,
GSM1959003 ,
GSM1959004 ,
GSM1959005 ,
GSM1959006 ,
GSM1959007 ,
GSM1959008 ,
GSM1959009 ,
GSM1959010 ,
GSM1959011 ,
GSM1959012 ,
GSM1959013 ,
GSM1959014 ,
GSM1959015 ,
GSM1959016 ,
GSM1959017 ,
GSM1959018 ,
GSM1959019 ,
GSM2027658 ,
GSM2027659 ,
GSM2027660 ,
GSM2027661 ,
GSM2027662 ,
GSM2027663 ,
GSM2027664 ,
GSM2027665 ,
GSM2027666 ,
GSM2027667 ,
GSM2027668 ,
GSM2027669 ,
GSM2027670 ,
GSM2027671 ,
GSM2027672 ,
GSM2027673 ,
GSM2027674 ,
GSM2027675 ,
GSM2027676 ,
GSM2027677 ,
GSM2510461 ,
GSM2510462 ,
GSM2510463 ,
GSM2510464 ,
GSM2510465 ,
GSM2510466 ,
GSM2510467 ,
GSM2510468 ,
GSM2510469 ,
GSM2510470 ,
GSM2510471 ,
GSM2510472 ,
GSM2510473 ,
GSM2510474 ,
GSM2510475 ,
GSM2510476 ,
GSM2510477 ,
GSM2510478 ,
GSM2510479 ,
GSM2510480 ,
GSM2510482 ,
GSM2510484 ,
GSM2510486 ,
GSM2510488 ,
GSM3703791 ,
GSM3703792 ,
GSM3703793 ,
GSM3703794 ,
GSM3703795 ,
GSM3703796 ,
GSM3703797 ,
GSM3703798 ,
GSM3703799 ,
GSM3703800 ,
GSM3703801 ,
GSM3703802 ,
GSM5551496 ,
GSM5551497 ,
GSM5551498 ,
GSM5551499 ,
GSM5551500 ,
GSM5551501 ,
GSM5551502 ,
GSM5551503 ,
GSM5551504 ,
GSM5551505 ,
GSM5551506 ,
GSM5551507 ,
GSM5551508 ,
GSM5551509 ,
GSM5551510 ,
GSM5551511 ,
GSM5551512 ,
GSM5551513 ,
GSM5551514 ,
GSM5551515 ,
GSM5551516 ,
GSM5551517 ,
GSM5551518 ,
GSM5551519 ,
GSM5958168 ,
GSM5958169 ,
GSM5958170 ,
GSM5958171 ,
GSM5958172 ,
GSM5958173 ,
GSM5958174 ,
GSM5958175 Series (7)
GSE74332 Potential biomarker genes for crowding stress in rainbow trout Oncorhynchus mykiss
GSE75563 Identification of genes involved in cold shock response in rainbow trout (Oncorhynchus mykiss)
GSE76543 Potential biomarker genes for crowding stress in maraena whitefish Coregonus maraena
GSE95422 Potential biomarker genes for acute and gradual temperature stress in maraena whitefish Coregonus lavaretus
GSE129271 Microarray-predicted marker genes and molecular pathways indicating combined crowding and thermal stress in rainbow trout (Oncorhynchus mykiss)
GSE183125 Microarray-predicted marker genes indicating handling stress in maraena whitefish (Coregonus maraena)
GSE198859 Analysis of red blood cells from rainbow trout Oncorhynchus mykiss infected by Tetracapsuloides bryosalmonae
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE SPOT_ID 1
192
328
GE_BrightCorner
GE_BrightCorner
pos
2
192
326
DarkCorner
DarkCorner
pos
3
192
324
DarkCorner
DarkCorner
pos
4
192
322
A_05_P462195
A_05_P462195
FALSE
tc|TC204218
unmapped
Rep: Zgc:136585 - Danio rerio (Zebrafish) (Brachydanio rerio), partial (51%) [TC204218]
TGTTACTGGGAGGTGGAGTGGACTGGGAAGTGGTTATACAGCAGTCTCATATAAAGACAT
tc|TC204218
5
192
320
A_05_P433852
A_05_P433852
FALSE
unmapped
ATTCAGTACAGTATGGAAGCTCAATGGTGTAAAAATATGAAATTGGCAGGGGTTGCGAGG
6
192
318
A_05_P360927
A_05_P360927
FALSE
EG894751
Ssa.30064
gb|EG894751
unmapped
EST_ssal_evf_52177 ssalevf mixed_tissue Salmo salar cDNA Salmo salar cDNA clone ssal_evf_569_326_rev 5', mRNA sequence [EG894751]
ATGTGTATGTATTTAAAGCACACTGGGAATGCTCTGATGTGTATCTGTCTACGACCCCCC
7
192
316
A_05_P462802
A_05_P462802
FALSE
tc|TC206450
unmapped
CTTTGGTAGACATCACTGTATTTGATGCTGTAAGGTTCTAATCCTCAGAGTAAAAACTAC
tc|TC206450
8
192
314
A_05_P282112
A_05_P282112
FALSE
EG865471
Ssa.9978
gb|EG865471
unmapped
EST_ssal_eve_27116 ssaleve thyroid Salmo salar cDNA Salmo salar cDNA clone ssal_eve_536_333_rev 5', mRNA sequence [EG865471]
CTAGTACTTAATTTAAAAAGTTTGAAATGCTACAAATATGGTAGGCTTCCAGTCCCGTTG
9
192
312
A_05_P488302
A_05_P488302
FALSE
tc|TC218245
unmapped
ATCTCTCGATGTAGTCTTGTTGTATCCATAATAGTGCTCTTGTTCCCTGAAAATAAATAC
tc|TC218245
10
192
310
A_05_P345972
A_05_P345972
FALSE
EG893294
Ssa.26572
gb|EG893294|tc|TC207485
unmapped
EST_ssal_evf_50866 ssalevf mixed_tissue Salmo salar cDNA Salmo salar cDNA clone ssal_evf_568_027_fwd 3', mRNA sequence [EG893294]
TGTTCAAAAGTGACACACCATTCCTTTTACTCAATGACACAGTGGTGGTTTTTGGCCTTT
11
192
308
A_05_P340067
A_05_P340067
FALSE
EG818701
Ssa.25326
gb|EG818701|tc|TC186113
unmapped
EST_ssal_evd_20810 ssalevd thymus Salmo salar cDNA Salmo salar cDNA clone ssal_evd_526_327_fwd 3', mRNA sequence [EG818701]
CCTGGAATATGTCAGTGCAGTGCACTGTTGGTTTCTCAATGAACATTCCTGTACTGCTTT
12
192
306
A_05_P348857
A_05_P348857
FALSE
DY700425
Ssa.27193
gb|DY700425|tc|TC213966
unmapped
EST_ssal_rgb2_56164 ssalrgb2 mixed_tissue Salmo salar cDNA Salmo salar cDNA clone ssal_rgb2_590_286_rev 5', mRNA sequence [DY700425]
AGTTGTATTGTGTAAAAGGAATTTCCTCACATACTGTTCATTGCACCCTAGCCTTTCATC
13
192
304
A_05_P307742
A_05_P307742
FALSE
DW533878
Ssa.16983
gb|DW533878|tc|TC215883
unmapped
EST_ssal_plnb_2514 plnb Salmo salar cDNA clone ssal_rgb2_019_062_rev 5', mRNA sequence [DW533878]
TGCACAAGTATTGTACAGTTTGTGGTTCCTGACCAACTGTAAACTACAATGCAATGGCAA
14
192
302
A_05_P396667
A_05_P396667
FALSE
EG784501
Ssa.38916
gb|EG784501
unmapped
EST_ssal_evd_40835 ssalevd thymus Salmo salar cDNA Salmo salar cDNA clone ssal_evd_554_267_rev 5', mRNA sequence [EG784501]
GCATTCCATACTTTTATGGTTTTGACTGCAGGACACAACCCTGGAGATAGTGCAACAGAG
15
192
300
A_05_P420512
A_05_P420512
FALSE
tc|TC183572|tc|TC193539
unmapped
GGCGATCGCTGAATTGATAAATTGTATTTGTGAATGTTTTGTTTCGATTGTTGACAAGTC
tc|TC183572|tc|TC193539
16
192
298
A_05_P288567
A_05_P288567
FALSE
DW546735
Ssa.11671
gb|DW546735|tc|TC179030
unmapped
EST_ssal_rgb2_11154 rgb2 Salmo salar cDNA clone ssal_rgb2_518_355_fwd 3', mRNA sequence [DW546735]
TTTTTAAACCAAGGGAAAGGGACTGTGATTGGTTGAGGGAGAAGGAACAGGTGTCTTCTG
17
192
296
A_05_P336757
A_05_P336757
FALSE
EG896642
Ssa.24639
gb|EG896642|tc|TC182620|tc|TC189608
unmapped
EST_ssal_evf_5478 ssalevf mixed_tissue Salmo salar cDNA Salmo salar cDNA clone ssal_evf_505_252_fwd 3', mRNA sequence [EG896642]
AAGCAGAAAGTGAGAGTTCTTCATGTAGAAGACAGTGGTGTGTCCATAGAACAAGTAGAT
18
192
294
A_05_P360822
A_05_P360822
FALSE
EG892940
Ssa.30036
gb|EG892940|tc|TC183951
unmapped
EST_ssal_evf_50547 ssalevf mixed_tissue Salmo salar cDNA Salmo salar cDNA clone ssal_evf_567_238_fwd 3', mRNA sequence [EG892940]
TAGTCTGTATGAATGGAGAAGATTGAAAAAGAGTGGTTGCTTTGTTTAATACCACACATG
19
192
292
A_05_P250204
A_05_P250204
FALSE
BT125210
Ssa.40910
gb|BT125210|gb|BT056449|tc|TC167364|tc|TC200361
unmapped
Salmo salar clone ssal-evd-554-346 Thymosin beta-11 putative mRNA, complete cds [BT125210]
GTACGTTGACCTTTTTTAGCGATGTGATTTGGGATAGCTTTTTGTGTTGCACCCTGTCTC
20
192
290
A_05_P369852
A_05_P369852
FALSE
unmapped
AATTTCTTTCCAGTCTGACCAAGGCATTTGGTCATTCTACCAAACAGAAAACACGTTCAA
62976 16976 Kbytes .Supplementary data files not provided
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