NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL21083 Query DataSets for GPL21083
Status Public on Oct 29, 2015
Title LC_MRA-1004_miRZebrafish_13.0_090309
Technology type in situ oligonucleotide
Distribution commercial
Organism Danio rerio
Manufacturer LC Sciences
Manufacture protocol Zebrafish miRNA microarray with 100% coverage of mature plant miRNAs listed in miRBase version 13.0. Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://miRBase.org) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.
 
 
Submission date Oct 28, 2015
Last update date Oct 29, 2015
Contact name Christoph Eicken
E-mail(s) ceicken@lcsciences.com
Phone +1 (713) 664-7087
Organization name LC Sciences, LLC
Street address 2575 W. Bellfort
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
 
Samples (6) GSM1921819, GSM1921820, GSM1921821, GSM1921822, GSM1921823, GSM1921824
Series (1)
GSE74494 MicroRNA expression profiling of zebrafish heart regeneration

Data table header descriptions
ID
miRNA_ID miRNA Accession No. in miRBase
Reporter BioSequence Database Entry[mirna]
Reporter BioSequence Type BioSequence type of the probe on the chip
Reporter BioSequence Polymer Type BioSequence polymer type of the probe on the chip
Reporter Group [role] General function of the particular probe on the chip: experimental / control
Reporter Control Type Specific function of the particular probe on the chip
Reporter Comment Target sequence (5' to 3') of the probe
SPOT_ID Spot ID

Data table
ID miRNA_ID Reporter BioSequence Database Entry[mirna] Reporter BioSequence Type Reporter BioSequence Polymer Type Reporter Group [role] Reporter Control Type Reporter Comment SPOT_ID
dre-let-7a dre-let-7a MIMAT0001759 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGGUUGUAUAGUU dre-let-7a
dre-let-7b dre-let-7b MIMAT0001760 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGGUUGUGUGGUU dre-let-7b
dre-let-7c dre-let-7c MIMAT0001761 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGGUUGUAUGGUU dre-let-7c
dre-let-7d dre-let-7d MIMAT0001762 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUUGGUUGUAUGGUU dre-let-7d
dre-let-7e dre-let-7e MIMAT0001763 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGAUUGAAUAGUU dre-let-7e
dre-let-7f dre-let-7f MIMAT0001764 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGAUUGUAUAGUU dre-let-7f
dre-let-7g dre-let-7g MIMAT0001765 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGUUUGUAUAGUU dre-let-7g
dre-let-7h dre-let-7h MIMAT0001766 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAAGUUGUGUUGUU dre-let-7h
dre-let-7i dre-let-7i MIMAT0001767 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUAGUUUGUGCUGUU dre-let-7i
dre-let-7j dre-let-7j MIMAT0003015 ss_oligo DNA experimental Target Seq (5' to 3') UGAGGUAGUUGUUUGUACAGUU dre-let-7j
dre-miR-1 dre-miR-1 MIMAT0001768 ss_oligo DNA experimental Target Seq (5' to 3') UGGAAUGUAAAGAAGUAUGUAU dre-miR-1
dre-miR-100 dre-miR-100 MIMAT0001813 ss_oligo DNA experimental Target Seq (5' to 3') AACCCGUAGAUCCGAACUUGUG dre-miR-100
dre-miR-101a dre-miR-101a MIMAT0001814 ss_oligo DNA experimental Target Seq (5' to 3') UACAGUACUGUGAUAACUGAAG dre-miR-101a
dre-miR-101b dre-miR-101b MIMAT0001815 ss_oligo DNA experimental Target Seq (5' to 3') UACAGUACUAUGAUAACUGAAG dre-miR-101b
dre-miR-103 dre-miR-103 MIMAT0001816 ss_oligo DNA experimental Target Seq (5' to 3') AGCAGCAUUGUACAGGGCUAUGA dre-miR-103
dre-miR-107 dre-miR-107 MIMAT0001817 ss_oligo DNA experimental Target Seq (5' to 3') AGCAGCAUUGUACAGGGCUAUCA dre-miR-107
dre-miR-10a dre-miR-10a MIMAT0001267 ss_oligo DNA experimental Target Seq (5' to 3') UACCCUGUAGAUCCGAAUUUGU dre-miR-10a
dre-miR-10a* dre-miR-10a* MIMAT0003391 ss_oligo DNA experimental Target Seq (5' to 3') CAAAUUCGUGUCUUGGGGAAUA dre-miR-10a*
dre-miR-10b dre-miR-10b MIMAT0001268 ss_oligo DNA experimental Target Seq (5' to 3') UACCCUGUAGAACCGAAUUUGUG dre-miR-10b
dre-miR-10c dre-miR-10c MIMAT0001770 ss_oligo DNA experimental Target Seq (5' to 3') UACCCUGUAGAUCCGGAUUUGU dre-miR-10c

Total number of rows: 268

Table truncated, full table size 30 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap