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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 27, 2015 |
| Title |
Illumina HiSeq 3000 (Arabidopsis thaliana) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Arabidopsis thaliana |
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| Submission date |
Nov 27, 2015 |
| Last update date |
Jun 12, 2017 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (1265)
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GSM1955414, GSM1955415, GSM1955416, GSM1955417, GSM2204067, GSM2204068
GSM2204069, GSM2204070, GSM2204071, GSM2204072, GSM2204073, GSM2204074, GSM2204075, GSM2286733, GSM2286734, GSM2286735, GSM2286736, GSM2286737, GSM2286738, GSM2286739, GSM2286740, GSM2286741, GSM2286742, GSM2286743, GSM2286744, GSM2301212, GSM2301213, GSM2301214, GSM2301215, GSM2301216, GSM2301217, GSM2301218, GSM2301219, GSM2301220, GSM2301221, GSM2301222, GSM2301223, GSM2301224, GSM2301225, GSM2301226, GSM2301227, GSM2301228, GSM2301229, GSM2301230, GSM2301231, GSM2301232, GSM2301233, GSM2301234, GSM2301235, GSM2327833, GSM2327844, GSM2467110, GSM2467111, GSM2467112, GSM2467113, GSM2467114, GSM2467115, GSM2467116, GSM2467117, GSM2467118, GSM2467119, GSM2467120, GSM2467121, GSM2467122, GSM2467123, GSM2467124, GSM2467125, GSM2467126, GSM2467127, GSM2467128, GSM2467129, GSM2467130, GSM2467131, GSM2467132, GSM2467133, GSM2467134, GSM2467135, GSM2467136, GSM2467137, GSM2467138, GSM2467139, GSM2467140, GSM2467141, GSM2467142, GSM2467143, GSM2467144, GSM2467145, GSM2471036, GSM2471037, GSM2471038, GSM2471039, GSM2471040, GSM2471041, GSM2471042, GSM2516794, GSM2516795, GSM2516796, GSM2516797, GSM2516798, GSM2516799, GSM2516800, GSM2516801, GSM2516802, GSM2516803, GSM2516804, GSM2516805, GSM2517002, GSM2517003, GSM2517004, GSM2517005, GSM2517006, GSM2517007, GSM2517008, GSM2517009, GSM2517010, GSM2517011, GSM2517012, GSM2517013, GSM2643103, GSM2643104, GSM2643105, GSM2643106, GSM2643107, GSM2643108, GSM2643109, GSM2643110, GSM2643111, GSM2643112, GSM2643113, GSM2643114, GSM2701077, GSM2701078, GSM2701079, GSM2701080, GSM2716999, GSM2717000, GSM2717001, GSM2717002, GSM2717003, GSM2717004, GSM2717005, GSM2717006, GSM2717007, GSM2717008, GSM2717009, GSM2717010, GSM2717011, GSM2717012, GSM2717013, GSM2717014, GSM2717015, GSM2717016, GSM2796785, GSM2796786, GSM2796787, GSM2796788, GSM2796789, GSM2796790, GSM2796791, GSM2796792, GSM2796793, GSM2796794, GSM2796795, GSM2796796, GSM2796797, GSM2796798, GSM2796799, GSM2796800, GSM2796801, GSM2796802, GSM2796803, GSM2796804, GSM2796805, GSM2796806, GSM2796807, GSM2796808, GSM2842781, GSM2842782, GSM2885144, GSM2885145, GSM2885146, GSM2885147, GSM2885148, GSM2885149, GSM2885150, GSM2885151, GSM2885152, GSM2885153, GSM2885154, GSM2885155, GSM2885156, GSM2885157, GSM2885158, GSM2885159, GSM2885160, GSM2885161, GSM2885162, GSM2885163, GSM2885164, GSM2885165, GSM2885166, GSM2885167, GSM2885168, GSM2885169, GSM2885170, GSM2885171, GSM2885172, GSM2885173, GSM2885174, GSM2885175, GSM2885176, GSM2885177, GSM2885178, GSM2885179, GSM2885180, GSM2885181, GSM2885182, GSM2885183, GSM2885184, GSM2885185, GSM2885186, GSM2885187, GSM2885188, GSM2885189, GSM2885190, GSM2885191, GSM2885192, GSM2885193, GSM2885194, GSM2885195, GSM2885196, GSM2885197, GSM2885198, GSM2885199, GSM2885200, GSM2885201, GSM2885202, GSM2885203, GSM2885204, GSM2885205, GSM2885206, GSM2885207, GSM2885208, GSM2885209, GSM2885210, GSM2885211, GSM2885212, GSM2885213, GSM2885214, GSM2885215, GSM2885216, GSM2885217, GSM2885218, GSM2885219, GSM2885220, GSM2885221, GSM2885222, GSM2885223, GSM2885224, GSM2885225, GSM2885226, GSM2885227, GSM2885228, GSM2885229, GSM2885230, GSM2885231, GSM2885232, GSM2885233, GSM2885234, GSM2885235, GSM2885236, GSM2885237, GSM2885238, GSM2885239, GSM2885240, GSM2885241, GSM2885242, GSM2885243, GSM2885244, GSM2885245, GSM2885246, GSM2885247, GSM2885248, GSM2885249, GSM2885250, GSM2885251, GSM2885252, GSM2885253, GSM2885254, GSM2885255, GSM2885256, GSM2885257, GSM2885258, GSM2885259, GSM2885260, GSM2885261, GSM2885262, GSM2885263, GSM2885264, GSM2885265, GSM2885266, GSM2885267, GSM2885268, GSM2885269, GSM2885270, GSM2885271, GSM2885272, GSM2885273, GSM2885274, GSM2885275, GSM2885276, GSM2885277, GSM2885278, GSM2885279, GSM2885280, GSM2885281, GSM2885282, GSM2885283, GSM2885284, GSM2885285, GSM2885286, GSM2885287, GSM2885288, GSM2885289, GSM2885290, GSM2885291, GSM2885292, GSM2885293, GSM2885294, GSM2885295, GSM2885296, GSM2885297, GSM2885298, GSM2885299, GSM2885300, GSM2885301, GSM2885302, GSM2885303, GSM2885304, GSM2885305, GSM2885306, GSM2885307, GSM2885308, GSM2885309, GSM2885310, GSM2885311, GSM2885312, GSM2885313, GSM2885314, GSM2885315, GSM2885316, GSM2885317, GSM2885318, GSM2885319, GSM2885320, GSM2885321, GSM2885322, GSM2885323, GSM2885324, GSM2885325, GSM2885326, GSM2885327, GSM2885328, GSM2885329, GSM2885330, GSM2885331, GSM2885332, GSM2885333, GSM2885334, GSM2885335, GSM2885336, GSM2885337, GSM2885338, GSM2885339, GSM2885340, GSM2885341, GSM2885342, GSM2885343, GSM2885344, GSM2885345, GSM2885346, GSM2885347, GSM2885348, GSM2885349, GSM2885350, GSM2885351, GSM2893718, GSM2893719, GSM2893720, GSM2893721, GSM2893722, GSM2893723, GSM2893724, GSM2893725, GSM2893726, GSM2893727, GSM2893728, GSM2893729, GSM3061284, GSM3061285, GSM3061286, GSM3061287, GSM3061288, GSM3061289, GSM3061290, GSM3061291, GSM3061292, GSM3061293, GSM3061294, GSM3061295, GSM3061296, GSM3061297, GSM3061298, GSM3061299, GSM3061300, GSM3061301, GSM3061302, GSM3061303, GSM3061304, GSM3061305, GSM3061306, GSM3061307, GSM3061308, GSM3061309, GSM3061310, GSM3061311, GSM3061312, GSM3061313, GSM3061314, GSM3061315, GSM3061316, GSM3061317, GSM3061318, GSM3061319, GSM3063009, GSM3063010, GSM3063011, GSM3063012, GSM3063013, GSM3063014, GSM3162112, GSM3162113, GSM3162114, GSM3162115, GSM3162116, GSM3162117, GSM3204535, GSM3204536, GSM3204537, GSM3204538, GSM3204539, GSM3204540, GSM3204541, GSM3204542, GSM3204543, GSM3204544, GSM3204545, GSM3204546, GSM3204547, GSM3204548, GSM3204549, GSM3204550, GSM3204551, GSM3204552, GSM3204553, GSM3204554, GSM3204555, GSM3204556, GSM3204557, GSM3204558, GSM3204559, GSM3204560, GSM3204561, GSM3204562, GSM3204563, GSM3204564, GSM3330489, GSM3330490, GSM3330491, GSM3330492, GSM3330493, GSM3330494, GSM3330501, GSM3330502, GSM3330503, GSM3330504, GSM3330505, GSM3330506, GSM3330507, GSM3330508, GSM3330509, GSM3330510, GSM3330511, GSM3330512, GSM3330513, GSM3330514, GSM3330515, GSM3330516, GSM3330517, GSM3330518...
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| Series (57)
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| GSE75456 |
Transcriptome analysis of wild-type and VaERF73 overexpressing Arabidopsis |
| GSE83478 |
Alternaria brassicicola infection regulates miRNAs in Arabidopsis thaliana [mRNA] |
| GSE83488 |
Alternaria brassicicola infection regulates miRNAs in Arabidopsis thaliana |
| GSE85883 |
SPLICING FACTOR FOR PHYTOCHROME SIGNALING promotes photomorphogenesis by regulating alternative splicing in Arabidopsis |
| GSE86380 |
The Photorespiratory BOU Gene Mutation Alters Sulfur Assimilation and Its Crosstalk With Carbon and Nitrogen Metabolism in Arabidopsis thaliana |
| GSE87329 |
Photorespiration is crucial to the dynamic response of photosynthetic metabolism and stomatal movement to altered CO2 availability |
| GSE94015 |
Tissue-Specific Transcriptomics Reveals Role of the Unfolded Protein Response in Maintaining Fertility upon Heat Stress in Arabidopsis |
| GSE94146 |
Tissue-Specific Transcriptomics Reveals Role of the Unfolded Protein Response in Maintaining Fertility upon Heat Stress in Arabidopsis - ChIP-Seq |
| GSE95586 |
Characterization of Epigenetic Regulation in an Extraterrestrial Environment: The Arabidopsis Spaceflight Methylome [RNA-seq] |
| GSE95594 |
Characterization of Epigenetic Regulation in an Extraterrestrial Environment: The Arabidopsis Spaceflight Methylome [Bisulfite-seq] |
| GSE95646 |
Characterization of Epigenetic Regulation in an Extraterrestrial Environment: The Arabidopsis Spaceflight Methylome |
| GSE99367 |
Transcriptome of SE, CBP20 and CBP80 mutants |
| GSE101321 |
RNA-seq analysis of gene expression levels duing callus formation on CIM using WT and lbd16-2 |
| GSE101839 |
Primed primary metabolism in systemic leaves: a functional systems analysis |
| GSE104385 |
Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana |
| GSE106568 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and ibm1-3 trancriptomes in normal light and high light condition |
| GSE107988 |
Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis |
| GSE108253 |
Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0) and 1 day after culture (DAC) from 9-day-old, 12-day-old and 15-day-old Col-0 seedlings |
| GSE112225 |
Cold priming and triggering of Arabidopsis accessions |
| GSE112254 |
Knock-down of phosphoserine phosphatase gene effects rather N- than S-metabolism in Arabidopsis thaliana |
| GSE114995 |
Coordinated regulation of pre-mRNA splicing by the SFPS-RRC1 complex to promote photomorphogenesis in Arabidopsis |
| GSE115991 |
Flg22 treatment of Brassicaceae and Arabidopsis thaliana accessions |
| GSE118458 |
Metabolic labeling of RNAs uncovers hidden features and dynamics of the Arabidopsis thaliana transcriptome [NEU] |
| GSE118461 |
Metabolic labeling of RNAs uncovers hidden features and dynamics of the Arabidopsis thaliana transcriptome [ERIC] |
| GSE118462 |
Metabolic labeling of RNAs uncovers hidden features and dynamics of the Arabidopsis thaliana transcriptome |
| GSE118483 |
Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [Bisulfite-Seq] |
| GSE118502 |
Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq] |
| GSE118503 |
Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. |
| GSE120418 |
Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0), at 10min to 12h after detachment Col-0, coi1-2 and sdg8-2 seedlings. |
| GSE120840 |
RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration |
| GSE124340 |
A large-scale circular RNA profiling reveals universal molecular mechanisms responsive to drought stress in maize and Arabidopsis |
| GSE125378 |
Distinct characteristics of Arabidopsis thaliana circular RNAs |
| GSE128655 |
Transcriptome changes across Col-0, klu and 35S:KLU |
| GSE129011 |
Role of AtMLKLs in response to powdery mildew fungus |
| GSE134124 |
Prevalent cytidylation and uridylation of precursor miRNAs in Arabidopsis |
| GSE136944 |
Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| GSE139165 |
Transcriptome-wide analysis of wounded region gene expression using detached first-pair rosette leaves before culture (time 0) and 2 day after culture (DAC) from 12-day-old Col-0 seedlings |
| GSE139503 |
Expression data from Arabidopsis thaliana Col-0 transformed with constructs misexpressing NAC052 transcription factor involving leaf morphology and anatomy |
| GSE140726 |
H3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT [RNA-seq] |
| GSE140727 |
H3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT [ChIP-seq] |
| GSE140728 |
H3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT |
| GSE149429 |
Genome-wide analysis of wild type and prmt5 mutant plants (Experiment A) |
| GSE149431 |
Genome-wide analysis of wild type and prmt5 mutant plants |
| GSE150422 |
Dissecting the co-transcriptome landscape of plants and microbiota |
| GSE155219 |
BAF1 and Brassinosteroid related mutant in Arabidopsis |
| GSE169302 |
Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| GSE169629 |
Genetic determinants of endophytism in the Arabidopsis root mycobiome |
| GSE172353 |
The E3 Ubiquitin Ligase AFF1 targets ARF19 to the proteasome |
| GSE182403 |
A plant tethering system for the functional study of protein-RNA interactions in vivo |
| GSE190241 |
RNAseq for mettl4 mutant in long-day condition |
| GSE196925 |
RNAseq analysis of Arabidopsis thaliana apices of Col-0, ap2-12 and rAP2-VENUS plants at 1-cm bolting stage |
| GSE197351 |
Specific CBF transcription factors and cold‐responsive genes fine‐tune the early triggering response after acquisition of cold priming and memory |
| GSE198022 |
Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses |
| GSE231841 |
Genome-resolved metatranscriptomics reveals conserved root colonization determinants in a synthetic microbiota |
| GSE237550 |
Multi-omics profiling reveals ethylene signalling as a key pathway underlying both genetic and epigenetic responses to low-dose ionizing radiation in Arabidopsis |
| GSE264500 |
New weapons explosive exhibits persistent toxicity in plants |
| GSE268716 |
ARID1 is required to regulate and reinforce H3K9me2 in sperm cells in Arabidopsis |
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| Supplementary data files not provided |
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