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Status
Public on Jun 06, 2005
Title
Micro-CRIBI Human Oligo Array (Operon V2.0)
Technology type
spotted oligonucleotide
Distribution
commercial
Organism
Homo sapiens
Description
This set consists of 21,329 70mer oligonucleotides (Operon version 2.0) designed on Human Unigene clusters, mainly in the 3 end terminal region. Each oligonucleotide is spotted by our robotic station Biorobotics Microgrid II, in two replicates on a MICROMAX glass slide SuperChip I (Cat No MPS696) provided by PerkinElmer Life Sciences Inc. The deposition is qualitatively assessed by a scan of the spotted slide at 10 micron resolution, using a GSI Lumonics scanner and a protocol that allows the detection of spotted features through the salts derived from the dried solution in which oligonucleotides are dissolved. Microarray slides that meet the quality standards, are washed as recommended by the supplier and the glass slides are stored, ready for use, in the dark under deep vacuum. Click below to see images of the array and detailed description of the spotting geometry, with the necessary parameters for analysis.
Web link
http://microcribi.cribi.unipd.it/ Contributor(s)
Cagnin S , Pacchioni B , Millino C , Celegato B , De Pittà C , Tombolan L , Romualdi C , Lanfranchi G Citation(s)
16091422 Submission date
May 30, 2005
Last update date
Apr 09, 2008
Contact name
Gerolamo Lanfranchi
E-mail(s)
stefano.cagnin@unipd.it Phone
+39-0498276219
Organization name
University of Padova
Department
CRIBI - Biotechnology Center and Biology Department
Lab
Functional Genomics Lab
Street address
Via U. Bassi, 58/B
City
Padova
ZIP/Postal code
35131
Country
Italy
Samples (39)
GSM60433 , GSM60434 , GSM60436 , GSM60437 , GSM60438 , GSM60440
GSM60442 ,
GSM60444 ,
GSM60448 ,
GSM60450 ,
GSM60451 ,
GSM124752 ,
GSM124828 ,
GSM124830 ,
GSM124831 ,
GSM570808 ,
GSM570809 ,
GSM570827 ,
GSM570828 ,
GSM570829 ,
GSM570830 ,
GSM613784 ,
GSM613785 ,
GSM613786 ,
GSM613787 ,
GSM613788 ,
GSM613789 ,
GSM613790 ,
GSM613791 ,
GSM613792 ,
GSM613793 ,
GSM613794 ,
GSM613795 ,
GSM613796 ,
GSM613797 ,
GSM613798 ,
GSM613799 ,
GSM613800 ,
GSM613801 Series (4)
GSE2776 Neurogenic potential of human mesenchymal stem cells revisited
GSE5444 Gene expression profile in individuals affected by Mucolipidosis type IV
GSE23196 High IGFBP2 Expression Correlates with Tumor Severity in Pediatric Rhabdomyosarcoma.
GSE24990 Gene expression of bone marrow fibroblasts from monoclonal gammopathy of undetermined significance and active multiple myeloma
Data table header descriptions ID
Oligo_ID Oligo Identify code by Operon
GB_ACC GenBank Accession number ,
SPOT_ID UNIGENE Uni Gene accession number
GENE Entrez GENE ID
Gene_Symbol Official gene symbol
Description Oligo probe description
Array row Array row position in CRIBI human oligo array (Operon V2.0)
Array column Array column position in CRIBI human oligo array (Operon V2.0)
Row row probe position in sub-array
Column column probe position in sub-array
Data table ID Oligo_ID GB_ACC SPOT_ID UNIGENE GENE Gene_Symbol Description Array row Array column Row Column 1
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
1
2
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
2
3
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
3
4
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
4
5
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
5
6
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
6
7
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
7
8
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
8
9
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
9
10
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
10
11
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
11
12
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
12
13
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
13
14
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
14
15
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
18
16
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
19
17
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
20
18
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
21
19
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
22
20
B059A12_ALIGNEMENT_GRID
B059A12_ALIGNEMENT_GRID
1
1
1
23
46752 4576 Kbytes .Supplementary data files not provided
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